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Report for CCDS3835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3835.1 Public Homo sapiens 4 IRF2 24 110 108 CCDS HistoryNCBI Gene:3660Re-query CCDS DB by CCDS ID:3835.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393593.8 ENSP00000377218.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393593.8Link to Ensembl Protein Viewer:ENSP00000377218.3Re-query CCDS DB by Nucleotide ID:ENST00000393593Re-query CCDS DB by Protein ID:ENSP00000377218
Original member Current member EBI ENST00000510814.6 ENSP00000424552.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510814.6Link to Ensembl Protein Viewer:ENSP00000424552.2Re-query CCDS DB by Nucleotide ID:ENST00000510814Re-query CCDS DB by Protein ID:ENSP00000424552
Original member Current member EBI ENST00000504340.2 ENSP00000512878.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504340.2Link to Ensembl Protein Viewer:ENSP00000512878.1Re-query CCDS DB by Nucleotide ID:ENST00000504340Re-query CCDS DB by Protein ID:ENSP00000512878
Original member Current member EBI ENST00000696840.1 ENSP00000512918.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696840.1Link to Ensembl Protein Viewer:ENSP00000512918.1Re-query CCDS DB by Nucleotide ID:ENST00000696840Re-query CCDS DB by Protein ID:ENSP00000512918
Original member Current member EBI ENST00000696843.1 ENSP00000512920.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696843.1Link to Ensembl Protein Viewer:ENSP00000512920.1Re-query CCDS DB by Nucleotide ID:ENST00000696843Re-query CCDS DB by Protein ID:ENSP00000512920
Original member Current member EBI ENST00000696845.1 ENSP00000512922.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696845.1Link to Ensembl Protein Viewer:ENSP00000512922.1Re-query CCDS DB by Nucleotide ID:ENST00000696845Re-query CCDS DB by Protein ID:ENSP00000512922
Original member Current member EBI ENST00000696846.1 ENSP00000512923.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696846.1Link to Ensembl Protein Viewer:ENSP00000512923.1Re-query CCDS DB by Nucleotide ID:ENST00000696846Re-query CCDS DB by Protein ID:ENSP00000512923
Original member Current member EBI ENST00000696849.1 ENSP00000512925.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696849.1Link to Ensembl Protein Viewer:ENSP00000512925.1Re-query CCDS DB by Nucleotide ID:ENST00000696849Re-query CCDS DB by Protein ID:ENSP00000512925
Original member Current member EBI ENST00000696851.1 ENSP00000512927.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696851.1Link to Ensembl Protein Viewer:ENSP00000512927.1Re-query CCDS DB by Nucleotide ID:ENST00000696851Re-query CCDS DB by Protein ID:ENSP00000512927
Original member Current member EBI ENST00000696841.1 ENSP00000512954.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696841.1Link to Ensembl Protein Viewer:ENSP00000512954.1Re-query CCDS DB by Nucleotide ID:ENST00000696841Re-query CCDS DB by Protein ID:ENSP00000512954
Original member Current member NCBI NM_002199.4 NP_002190.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002199.4Link to Protein Sequence:NP_002190.2Re-query CCDS DB by Nucleotide ID:NM_002199Re-query CCDS DB by Protein ID:NP_002190Link to BLAST:NP_002190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002190.2 349 P14316-1 349 100% 0 0

Chromosomal Locations for CCDS 3835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 184388758 184389066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184390703 184390749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184398915 184399079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184408158 184408275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184418167 184418213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184418532 184418708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184419469 184419568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184428978 184429064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGCCGGTGGAAAGGATGCGCATGCGCCCGTGGCTGGAGGAGCAGATAAACTCCAACACGATCCCGGGGC
TCAAGTGGCTTAACAAGGAAAAGAAGATTTTTCAGATCCCCTGGATGCATGCGGCTAGACATGGGTGGGA
TGTGGAAAAAGATGCACCACTCTTTAGAAACTGGGCAATCCATACAGGAAAGCATCAACCAGGAGTAGAT
AAACCTGATCCCAAAACATGGAAGGCGAATTTCAGATGCGCCATGAATTCCTTGCCTGATATTGAAGAAG
TCAAGGATAAAAGCATAAAGAAAGGAAATAATGCCTTCAGGGTCTACCGAATGCTGCCCCTATCAGAACG
GCCTTCTAAGAAAGGAAAGAAACCAAAGACAGAAAAAGAAGACAAAGTTAAGCACATCAAGCAAGAACCA
GTTGAGTCATCTCTGGGGCTTAGTAATGGAGTAAGTGATCTTTCTCCTGAGTATGCGGTCCTGACTTCAA
CTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCCCATCTGGACAGCAACAT
TGAGAATCAAGAGATTGTCACCAATCCGCCAGACATTTGCCAAGTTGTAGAGGTGACCACTGAGAGCGAC
GAGCAGCCGGTCAGCATGAGCGAGCTCTACCCTCTGCAGATCTCCCCCGTGTCTTCCTATGCAGAAAGCG
AAACGACTGATAGTGTGCCCAGCGATGAAGAGAGTGCCGAGGGGCGGCCACACTGGCGGAAGAGGAATAT
TGAAGGCAAACAGTACCTCAGCAACATGGGGACTCGAGGCTCCTACCTGCTGCCCGGCATGGCGTCCTTC
GTCACTTCCAACAAACCGGACCTCCAGGTCACCATCAAAGAGGAGAGCAATCCGGTGCCTTACAACAGCT
CCTGGCCCCCTTTTCAAGACCTCCCCCTTTCTTCCTCCATGACCCCAGCATCCAGCAGCAGTCGGCCAGA
CCGGGAGACCCGGGCCAGCGTCATCAAGAAAACATCGGATATCACCCAGGCCCGCGTCAAGAGCTGTTAA

Translation (349 aa):
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGVD
KPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPKTEKEDKVKHIKQEP
VESSLGLSNGVSDLSPEYAVLTSTIKNEVDSTVNIIVVGQSHLDSNIENQEIVTNPPDICQVVEVTTESD
EQPVSMSELYPLQISPVSSYAESETTDSVPSDEESAEGRPHWRKRNIEGKQYLSNMGTRGSYLLPGMASF
VTSNKPDLQVTIKEESNPVPYNSSWPPFQDLPLSSSMTPASSSSRPDRETRASVIKKTSDITQARVKSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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