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Report for CCDS23866.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23866.2 Public Mus musculus 10 Mcu 23 108 98 CCDS HistoryNCBI Gene:215999Re-query CCDS DB by CCDS ID:23866.2Re-query CCDS DB by GeneID:215999See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 23866.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in a longer N-terminus that is better supported by the available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23866.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020312.12 ENSMUSP00000020312.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020312.12Link to Ensembl Protein Viewer:ENSMUSP00000020312.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020312Re-query CCDS DB by Protein ID:ENSMUSP00000020312
Original member Current member NCBI NM_001033259.4 NP_001028431.2 Accepted alive Link to Nucleotide Sequence:NM_001033259.4Link to Protein Sequence:NP_001028431.2Re-query CCDS DB by Nucleotide ID:NM_001033259Re-query CCDS DB by Protein ID:NP_001028431Link to BLAST:NP_001028431.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028431.2 350 Q3UMR5-1 350 100% 0 0

Chromosomal Locations for CCDS 23866.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59448781 59448858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59451206 59451322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59454946 59455149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59456649 59456809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59466454 59466558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59467626 59467796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59491087 59491156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59616524 59616670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCGGCCGCCGCAGGTAGATCGCTCCTGCTGCTGCTCTGCTCCCGGGGCGGCGGCGGGGGCGCCGGCG
GCTGCGGAGCGCTGACTGCCGGCTGCTTTCCCGGGCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCA
CCGGACGGCACACCAGAGGCCGGCTTCCTGGCAGAGCGTGGGAGCCGCATATTGCAGTACGGTTGTGCCC
TCTGATGACGTGACGGTGGTTTACCAAAATGGATTACCGGTGATATCTGTGAGGCTACCCTCTCGACGCG
AGCGCTGCCAATTCACACTCAAGCCTATCTCTGACTCAGTCGGCGTGTTTTTACGACAACTGCAAGAGGA
GGATCGGGGAATCGACCGGGTCGCCATCTACTCACCAGATGGCGTTCGAGTCGCTGCCTCCACGGGGATA
GACCTCCTGCTCCTCGATGACTTTAAGCTTGTCATTAATGACTTAACATACCACGTACGGCCACCAAAGA
GAGACCTCCTAAGCCATGAAGATGCAGCGACGCTGAACGACGTGAAGACCCTGGTCCAGCAGCTGTACAC
CACACTGTGCATTGAGCAGCATCAGCTTAACAAAGAGCGGGAGCTCGTGGAGAGGTTAGAGGACCTCAAG
CAGCAGCTGGCCCCCCTGGAGAAGGTACGAATTGAAATTAGCAGAAAAGCAGAGAAGAGGACCACTCTGG
TGCTGTGGGGAGGCCTGGCCTACATGGCCACCCAGTTTGGCATTCTGGCCCGGCTCACCTGGTGGGAGTA
CTCGTGGGACATCATGGAGCCCGTCACCTACTTCATCACGTACGGAAGCGCCATGGCCATGTATGCGTAT
TTTGTAATGACGCGCCAGGAATATGTTTATCCAGAAGCCAGAGACAGACAATACTTATTATTTTTCCATA
AAGGAGCCAAAAAGTCACGTTTCGACCTAGAGAAATACAATCAGCTCAAGGATGCAATTGCTCAGGCAGA
AATGGATCTTAAGAGACTGAGAGACCCATTACAAGTACACCTGCCCCTCCGACAGATCGGAGAAAAGGAA
TGA

Translation (350 aa):
MAAAAGRSLLLLLCSRGGGGGAGGCGALTAGCFPGLGVSRHRPHQQHRTAHQRPASWQSVGAAYCSTVVP
SDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTGI
DLLLLDDFKLVINDLTYHVRPPKRDLLSHEDAATLNDVKTLVQQLYTTLCIEQHQLNKERELVERLEDLK
QQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAMAMYAY
FVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRDPLQVHLPLRQIGEKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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