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Report for CCDS88707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88707.1 Public Mus musculus 14 Dmtn 23 108 98 CCDS HistoryNCBI Gene:13829Re-query CCDS DB by CCDS ID:88707.1Re-query CCDS DB by GeneID:13829See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88707.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228295.1 ENSMUSP00000154373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228295.1Link to Ensembl Protein Viewer:ENSMUSP00000154373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228295Re-query CCDS DB by Protein ID:ENSMUSP00000154373
Original member Current member NCBI NM_001252664.1 NP_001239593.1 Accepted alive Link to Nucleotide Sequence:NM_001252664.1Link to Protein Sequence:NP_001239593.1Re-query CCDS DB by Nucleotide ID:NM_001252664Re-query CCDS DB by Protein ID:NP_001239593Link to BLAST:NP_001239593.1
Original member Current member NCBI NM_001360028.1 NP_001346957.1 Accepted alive Link to Nucleotide Sequence:NM_001360028.1Link to Protein Sequence:NP_001346957.1Re-query CCDS DB by Nucleotide ID:NM_001360028Re-query CCDS DB by Protein ID:NP_001346957Link to BLAST:NP_001346957.1
Original member Current member NCBI NM_001360030.1 NP_001346959.1 Accepted alive Link to Nucleotide Sequence:NM_001360030.1Link to Protein Sequence:NP_001346959.1Re-query CCDS DB by Nucleotide ID:NM_001360030Re-query CCDS DB by Protein ID:NP_001346959Link to BLAST:NP_001346959.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239593.1 380 Q9WV69-3 380 100% 0 0
NP_001346957.1 380 Q9WV69-3 380 100% 0 0
NP_001346959.1 380 Q9WV69-3 380 100% 0 0

Chromosomal Locations for CCDS 88707.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70604741 70604854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70604968 70605048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70605297 70605362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70605541 70605548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70605693 70605741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70605894 70605958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70612668 70612773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70613296 70613420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70614843 70614995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70615234 70615290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70615614 70615713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70616074 70616118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70617285 70617440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70618239 70618256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGAACGTCTGCAGAAGGCCAAGATGGACAACCAGGTGTTGGGCTACAAGGATCTGGCTGCCATCCCCA
AGGACAAGGCCATCCTGGACATTGAGCGACCTGACCTCATGATCTATGAGCCCCACTTTACCTATTCCCT
CCTGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCTCACTGTCACCCAAATCCACATCCCCCCCACCG
TCTCCAGAGGTGTGGGCGGAGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAGGACCACAG
GGACCCCCAGGACCAGCCTGCCCCACTTCCACCACCCTGAGACTACCCGCCCGGATTCCAACATCTACAA
GAAGCCACCCATCTACAAACAGAGAGAATCCGTGGGAGGCAGCCCTCAGAGCAAGCACCTCATCGAGGAC
CTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGAGA
CTGACTACTGGCCATGTCCCCCGTCGCTGGCCGTTGTGGAGACAGAATGGAGGAAACGGAAGGCATCTCG
AAAGGGGGCAGAGGAAGAGGAGGAAGAGGAAGACGATGACTCTGAAGAGGAGATTAAGGCCATCAGGGAA
CGGCAGAAAGAGGAGCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGAGATGGAAA
AGTCATTGCCCATCCGGAGGAAAACACGCTCTCTGCCTGACCGGACACCCTTCCATACCTCCTTGCATTC
GGGAACATCTAAATCCTCTTCGCTTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTACAGTCCACAGAA
TTCAGCCCATCGGGAAGTGAGGCTGGGAGCCCAGGCCTGCAGAACGGAGAGGGCCAGAGGGGGAGGATGG
ATCGGGGGAACTCCCTGCCCTGTGTGCTGGAGCAGAAGATCTATCCCTATGAGATGCTGGTGGTGACCAA
TAAGGGGAGAACTAAGCTGCCTCCGGGTGTGGACCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGAC
TTCTCTAGGGTCTTCGCCATGTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAAGCGGAACGAACTTA
AGAAGAAAGCTTCCCTCTTCTGA

Translation (380 aa):
MERLQKAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRECSLSPKSTSPPP
SPEVWAESRTLGIISQASTPRTTGTPRTSLPHFHHPETTRPDSNIYKKPPIYKQRESVGGSPQSKHLIED
LIIESSKFPAAQPPDPNQPAKIETDYWPCPPSLAVVETEWRKRKASRKGAEEEEEEEDDDSEEEIKAIRE
RQKEELSKVTSNLGKMILKEEMEKSLPIRRKTRSLPDRTPFHTSLHSGTSKSSSLPSYGRTTLSRLQSTE
FSPSGSEAGSPGLQNGEGQRGRMDRGNSLPCVLEQKIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAED
FSRVFAMSPEEFGKLALWKRNELKKKASLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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