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Report for CCDS27259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27259.1 Public Mus musculus 14 Dmtn 23 108 98 CCDS HistoryNCBI Gene:13829Re-query CCDS DB by CCDS ID:27259.1Re-query CCDS DB by GeneID:13829See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110984.3 ENSMUSP00000106612.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110984.3Link to Ensembl Protein Viewer:ENSMUSP00000106612.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110984Re-query CCDS DB by Protein ID:ENSMUSP00000106612
Original member Current member EBI ENSMUST00000228009.1 ENSMUSP00000153828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228009.1Link to Ensembl Protein Viewer:ENSMUSP00000153828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228009Re-query CCDS DB by Protein ID:ENSMUSP00000153828
Original member Current member NCBI NM_001252663.1 NP_001239592.1 Accepted alive Link to Nucleotide Sequence:NM_001252663.1Link to Protein Sequence:NP_001239592.1Re-query CCDS DB by Nucleotide ID:NM_001252663Re-query CCDS DB by Protein ID:NP_001239592Link to BLAST:NP_001239592.1
Original member Current member NCBI NM_001360027.1 NP_001346956.1 Accepted alive Link to Nucleotide Sequence:NM_001360027.1Link to Protein Sequence:NP_001346956.1Re-query CCDS DB by Nucleotide ID:NM_001360027Re-query CCDS DB by Protein ID:NP_001346956Link to BLAST:NP_001346956.1
Original member Current member NCBI NM_013514.4 NP_038542.1 Accepted alive Link to Nucleotide Sequence:NM_013514.4Link to Protein Sequence:NP_038542.1Re-query CCDS DB by Nucleotide ID:NM_013514Re-query CCDS DB by Protein ID:NP_038542Link to BLAST:NP_038542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239592.1 383 Q9WV69-2 383 100% 0 0
NP_001346956.1 383 Q9WV69-2 383 100% 0 0
NP_038542.1 383 Q9WV69-2 383 100% 0 0

Chromosomal Locations for CCDS 27259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70604741 70604854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70604968 70605048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70605541 70605548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70605693 70605741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70605894 70605958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70612668 70612773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70613296 70613420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70614843 70614995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70615234 70615290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70615614 70615713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70616074 70616118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70617285 70617440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70617955 70618029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70618239 70618256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGGAACGTCTGCAGAAGCAACCTCTTACCTCCCCGGGGAGCGTCAGCTCCTCCAGAGACTCCAGTGTGC
CCGGCTCTCCCTCCAGCATCGTGGCCAAGATGGACAACCAGGTGTTGGGCTACAAGGATCTGGCTGCCAT
CCCCAAGGACAAGGCCATCCTGGACATTGAGCGACCTGACCTCATGATCTATGAGCCCCACTTTACCTAT
TCCCTCCTGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCTCACTGTCACCCAAATCCACATCCCCCC
CACCGTCTCCAGAGGTGTGGGCGGAGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAGGAC
CACAGGGACCCCCAGGACCAGCCTGCCCCACTTCCACCACCCTGAGACTACCCGCCCGGATTCCAACATC
TACAAGAAGCCACCCATCTACAAACAGAGAGAATCCGTGGGAGGCAGCCCTCAGAGCAAGCACCTCATCG
AGGACCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT
AGAGACTGACTACTGGCCATGTCCCCCGTCGCTGGCCGTTGTGGAGACAGAATGGAGGAAACGGAAGGCA
TCTCGAAAGGGGGCAGAGGAAGAGGAGGAAGAGGAAGACGATGACTCTGAAGAGGAGATTAAGGCCATCA
GGGAACGGCAGAAAGAGGAGCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGAGAT
GGAAAAGTCATTGCCCATCCGGAGGAAAACACGCTCTCTGCCTGACCGGACACCCTTCCATACCTCCTTG
CATTCGGGAACATCTAAATCCTCTTCGCTTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTACAGTCCA
CAGAATTCAGCCCATCGGGAAGTGAGGCTGGGAGCCCAGGCCTGCAGATCTATCCCTATGAGATGCTGGT
GGTGACCAATAAGGGGAGAACTAAGCTGCCTCCGGGTGTGGACCGCATGAGGCTTGAGAGGCATTTGTCA
GCAGAGGACTTCTCTAGGGTCTTCGCCATGTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAAGCGGA
ACGAACTTAAGAAGAAAGCTTCCCTCTTCTGA

Translation (383 aa):
MERLQKQPLTSPGSVSSSRDSSVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTY
SLLEHVELPRSRECSLSPKSTSPPPSPEVWAESRTLGIISQASTPRTTGTPRTSLPHFHHPETTRPDSNI
YKKPPIYKQRESVGGSPQSKHLIEDLIIESSKFPAAQPPDPNQPAKIETDYWPCPPSLAVVETEWRKRKA
SRKGAEEEEEEEDDDSEEEIKAIRERQKEELSKVTSNLGKMILKEEMEKSLPIRRKTRSLPDRTPFHTSL
HSGTSKSSSLPSYGRTTLSRLQSTEFSPSGSEAGSPGLQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLS
AEDFSRVFAMSPEEFGKLALWKRNELKKKASLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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