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Report for CCDS26476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26476.1 Public Mus musculus 13 Tbc1d7 23 108 98 CCDS HistoryNCBI Gene:67046Re-query CCDS DB by CCDS ID:26476.1Re-query CCDS DB by GeneID:67046See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021797.8 ENSMUSP00000021797.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021797.8Link to Ensembl Protein Viewer:ENSMUSP00000021797.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021797Re-query CCDS DB by Protein ID:ENSMUSP00000021797
Original member Current member EBI ENSMUST00000179852.8 ENSMUSP00000137280.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179852.8Link to Ensembl Protein Viewer:ENSMUSP00000137280.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179852Re-query CCDS DB by Protein ID:ENSMUSP00000137280
Original member Current member NCBI NM_001252639.1 NP_001239568.1 Accepted alive Link to Nucleotide Sequence:NM_001252639.1Link to Protein Sequence:NP_001239568.1Re-query CCDS DB by Nucleotide ID:NM_001252639Re-query CCDS DB by Protein ID:NP_001239568Link to BLAST:NP_001239568.1
Original member Current member NCBI NM_025935.3 NP_080211.1 Accepted alive Link to Nucleotide Sequence:NM_025935.3Link to Protein Sequence:NP_080211.1Re-query CCDS DB by Nucleotide ID:NM_025935Re-query CCDS DB by Protein ID:NP_080211Link to BLAST:NP_080211.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239568.1 293 Q9D0K0-1 293 100% 0 0
NP_080211.1 293 Q9D0K0-1 293 100% 0 0

Chromosomal Locations for CCDS 26476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 43151894 43151980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43153070 43153199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43154689 43154834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43159263 43159400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43165279 43165466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43168774 43168854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43169802 43169913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGACTGACGACTCTCAGAGGAACTTTCGATCAGTCTACTATGAGAAAGTCGGGTTTCGTGGTGTCGAAG
AAAAGAAATCACTGGAAATCCTCCTGAAAGATGACCGTTTGGACATCGAGAAGCTTTGCACATTTAGCCA
GAGGTTCCCTCTCCCATCCATGTATCGCGCGTTGGTATGGAAGGCGCTTCTAGGCATCTTACCTCCGCAC
CATGACACTCATTCCCAGGTGATGGCCTACCGCAAAGACCAGTACCATGACATCCTCCATGCCCTGACAG
TCGTCCGCTTCATCAGTGATGCCACGCCACAGGCTGAAGTGTATCTTCGCATGTATCAGCTTGAATCGGG
GAAGCTACCTCGAAGTCCCTCTTTTCCTCTGGAGCCGGAGGATGAAGTCTTTCTTGCCATCGCCAAGGCC
ATGGAAGAGATGGTGGAAGACAGTGTGGACTGTTACTGGATCAGCCGATGCTTCGTGAAGCAGTTAAATA
ACAAGTACAGGGACGCTTTACCTCAGCTGCCCAAGGCTTTCGAGCAGTACTTGAATCTGGAAGACAGTAG
GCTGCTGAGTCACCTGAAGACGTGTTCTGCAGTGTCCAAACTGCCTTACGACCTCTGGTTCCAAAGGTGC
TTCGCGGGATGCCTCCCCGAGTCCAGTTTACAGAGGGTCTGGGATAAAGTCGTAAGTGGATCCTGTAAGA
TCCTAGTTTTTGTAGCGGTAGAAATACTATTAACCTTTAAAATAAAGGTCATGGCATTGAACAGTGCAGA
GAAGATAACGAAGTTCCTGGAAAATATTCCTCAGGACAGCTCAGATGCCATCGTGAGCAAGGCCATCGAC
TTGTGGCACAAACACTGTGGGACCCCAGTGCATTCGGCCTGA

Translation (293 aa):
MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSMYRALVWKALLGILPPH
HDTHSQVMAYRKDQYHDILHALTVVRFISDATPQAEVYLRMYQLESGKLPRSPSFPLEPEDEVFLAIAKA
MEEMVEDSVDCYWISRCFVKQLNNKYRDALPQLPKAFEQYLNLEDSRLLSHLKTCSAVSKLPYDLWFQRC
FAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAID
LWHKHCGTPVHSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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