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Report for CCDS37691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37691.1 Public Mus musculus 17 Slc30a6 23 108 98 CCDS HistoryNCBI Gene:210148Re-query CCDS DB by CCDS ID:37691.1Re-query CCDS DB by GeneID:210148See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37691.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024870.8 ENSMUSP00000024870.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024870.8Link to Ensembl Protein Viewer:ENSMUSP00000024870.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024870Re-query CCDS DB by Protein ID:ENSMUSP00000024870
Original member Current member NCBI NM_144798.6 NP_659047.2 Accepted alive Link to Nucleotide Sequence:NM_144798.6Link to Protein Sequence:NP_659047.2Re-query CCDS DB by Nucleotide ID:NM_144798Re-query CCDS DB by Protein ID:NP_659047Link to BLAST:NP_659047.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659047.2 460 Q8BJM5 460 100% 0 0

Chromosomal Locations for CCDS 37691.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74395666 74395668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74401912 74401998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74404004 74404088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74405685 74405727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74407221 74407286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74408846 74408926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74409353 74409388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74410334 74410428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74412274 74412322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74412607 74412726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74415620 74415722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74418620 74418667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74419532 74419600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74423017 74423514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGGGACGATTCATCTCTTTCGAAAGCCACAGAGATCTTTTTTTGGAAAGTTACTACAGGAATTTAGAC
TTGTCGCAGCTGACCGGAGGTCCTGGAAGATCCTTCTGTTCGGTGCAATCAACGTGCTGTGCACTGGCTT
CCTGCTCATGTGGTGCAGCTCCACCAACAGCATCGCATTAACTGCCTATACTTACCTCACCATCTTTGAT
CTCTTTAGTTTAATAACATGTTTAATAAGCTACTGGGTAATGATGAGGAAACCTAGCCCTGTCTATTCAT
TTGGGTTTGAAAGATTAGAAGTCCTGGCTGTATTTGCTTCTACTGTCTTGGCACAATTGGGAGCCCTCTT
TATACTAAAAGAAAGTGCAGAACGCTTTTTGGAGCAGCCCGAGATACACACGGGAAGATTGTTAGTTGGT
ACTTTTGTGGCCCTTTCTTTCAACCTGTTCACGATGCTTTCTATTCGGAATAAGCCTTTTGCTTACGTCT
CTGAAGCTGCTAGTACGAGCTGGCTTCAGGAGCACGTGGCAGACCTTAGCCGCAGCTTGTGTGGCCTTAT
CCCAGGACTCAGCAGTATCTTCCTGCCCCGCATGAATCCGTTTGTTCTGATTGATCTTGCTGGGGCGTTT
GCTCTGTGTATAACATACATGCTGATTGAGATTAATAACTACTTTGCCGTGGACACTGCGTCAGCCATTG
CCATTGCCCTGATGACGTTTGGCACCATGTACCCCATGAGTGTGTACAGTGGGAAAGTGCTCCTCCAGAC
AACACCACCTCATGTTATCGGTCAGTTGGACAAACTGATTAGAGAGGTGTCTACCTTGGATGGGGTGCTA
GAAGTCCGAAATGAACACTTTTGGACCCTTGGATTTGGCTCATTGGCTGGGTCAGTGCATGTACGGATCC
GACGAGATGCGAACGAACAAATGGTCCTTGCTCATGTGAGCAACAGGCTGTGCACGCTGGTGTCCACGCT
GACTGTTCAGATCTTCAAGGACGACTGGATTCGGCCTGCCTTATCCTCTGGGCCTGTTGCGCCCAACGTC
CTAAACTTCTCAGACCATCACGTAATCCCAATGCCTTTATTAAAGAACGTGGATGAGAGGACCCCCGTCA
CGTCAACCCCAGCCAAGCCCAGCAGCCCACCTCCGGAGTTTTCATTTAATACGCCTGGGAAAAACGTGAG
CCCGGTTATTCTTCTGAACACACAGACAAGGCCATATAGTTTGGGTCTTAATCGCGGACACACACCATAC
AGCAGCGTGTTCAGCCAAGGACTCGCATTTCCAGGAGTTGGAGCAGGCCAGGGATTGAGGCCCACCTTCC
CACATATACCAAGTAGATATGGAATCAACAGGATGGGGCAGCCAAGACCCTGA

Translation (460 aa):
MGTIHLFRKPQRSFFGKLLQEFRLVAADRRSWKILLFGAINVLCTGFLLMWCSSTNSIALTAYTYLTIFD
LFSLITCLISYWVMMRKPSPVYSFGFERLEVLAVFASTVLAQLGALFILKESAERFLEQPEIHTGRLLVG
TFVALSFNLFTMLSIRNKPFAYVSEAASTSWLQEHVADLSRSLCGLIPGLSSIFLPRMNPFVLIDLAGAF
ALCITYMLIEINNYFAVDTASAIAIALMTFGTMYPMSVYSGKVLLQTTPPHVIGQLDKLIREVSTLDGVL
EVRNEHFWTLGFGSLAGSVHVRIRRDANEQMVLAHVSNRLCTLVSTLTVQIFKDDWIRPALSSGPVAPNV
LNFSDHHVIPMPLLKNVDERTPVTSTPAKPSSPPPEFSFNTPGKNVSPVILLNTQTRPYSLGLNRGHTPY
SSVFSQGLAFPGVGAGQGLRPTFPHIPSRYGINRMGQPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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