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Report for CCDS28824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28824.1 Public Mus musculus 17 Tjap1 23 108 98 CCDS HistoryNCBI Gene:74094Re-query CCDS DB by CCDS ID:28824.1Re-query CCDS DB by GeneID:74094See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012440.13 ENSMUSP00000012440.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012440.13Link to Ensembl Protein Viewer:ENSMUSP00000012440.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000012440Re-query CCDS DB by Protein ID:ENSMUSP00000012440
Original member Current member EBI ENSMUST00000164342.9 ENSMUSP00000130710.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164342.9Link to Ensembl Protein Viewer:ENSMUSP00000130710.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164342Re-query CCDS DB by Protein ID:ENSMUSP00000130710
Original member Current member EBI ENSMUST00000180283.1 ENSMUSP00000137220.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180283.1Link to Ensembl Protein Viewer:ENSMUSP00000137220.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180283Re-query CCDS DB by Protein ID:ENSMUSP00000137220
Original member Current member EBI ENSMUST00000225080.1 ENSMUSP00000153327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225080.1Link to Ensembl Protein Viewer:ENSMUSP00000153327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225080Re-query CCDS DB by Protein ID:ENSMUSP00000153327
Original member Current member NCBI NM_001252473.1 NP_001239402.1 Accepted alive Link to Nucleotide Sequence:NM_001252473.1Link to Protein Sequence:NP_001239402.1Re-query CCDS DB by Nucleotide ID:NM_001252473Re-query CCDS DB by Protein ID:NP_001239402Link to BLAST:NP_001239402.1
Original member Current member NCBI NM_001252474.1 NP_001239403.1 Accepted alive Link to Nucleotide Sequence:NM_001252474.1Link to Protein Sequence:NP_001239403.1Re-query CCDS DB by Nucleotide ID:NM_001252474Re-query CCDS DB by Protein ID:NP_001239403Link to BLAST:NP_001239403.1
Original member Current member NCBI NM_001252475.1 NP_001239404.1 Accepted alive Link to Nucleotide Sequence:NM_001252475.1Link to Protein Sequence:NP_001239404.1Re-query CCDS DB by Nucleotide ID:NM_001252475Re-query CCDS DB by Protein ID:NP_001239404Link to BLAST:NP_001239404.1
Original member Current member NCBI NM_028751.3 NP_083027.1 Accepted alive Link to Nucleotide Sequence:NM_028751.3Link to Protein Sequence:NP_083027.1Re-query CCDS DB by Nucleotide ID:NM_028751Re-query CCDS DB by Protein ID:NP_083027Link to BLAST:NP_083027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239402.1 539 Q9DCD5-2 539 100% 0 0
NP_001239403.1 539 Q9DCD5-2 539 100% 0 0
NP_001239404.1 539 Q9DCD5-2 539 100% 0 0
NP_083027.1 539 Q9DCD5-2 539 100% 0 0

Chromosomal Locations for CCDS 28824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46258413 46259483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46259937 46260020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46260095 46260202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46261136 46261202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46261419 46261580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46262402 46262430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46263689 46263787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGAGCAGTGCTGCCCCTGCTAAGAAACCTTACCGTAAGGCGCCTCCAGAGCACCGAGAGCTACGCCTGG
AGATTCCCGTGTCCCGGCTCGAGCAAGAGGAGTCCCTGACTGACGCAGAGCGGATGAAACTTTTGCAGCA
GGAGAATGAAGAACTTCGCAAACGCCTGGCCTCAGCTACCAGACGCACTGAGGCCTTGGAGCGGGAGCTG
GAAATAGGACAAGACTGCCTAGAACTGGAGTTAGGACAGAGCCGTGAGGAGCTGGACAAGTTTAAGGACA
AATTCCGCAGGCTACAGAACAGCTACACGGCATCCCAGCGGACCAACCAGGAACTGGAGGACAAGCTGCA
CGCACTGATCAAGAAGGCTGAGATGGACAGGAAGACGCTGGACTGGGAGATTGTGGAGCTGACCAACAAG
CTACTGGATGCCAGGAACACCATCAATAAACTGGAAGAGCTCAATGAGCGGTACCGGCTGGACTGCAACC
TGGCGGTGCAGCTTCTCAAGTGCAACAAGTCCCACTTCCGGAACCACAAGCTTGCTGACCTACCCTGTGA
GCTCCAGGACATGGTTCGAAAACATCTGCGCAGTGGGCAGGAGGTTGCCAGCCCCAGCCCCAGCCCTTCT
TCCAGCCTGTCCCCAGGGGCTGTGGTGCCTACCTCAGTCATTGCCCGGGTGTTGGAGAAACCTGAGTCTC
TCTTGCTCAATTCAGCTCAGTCTGGCAGTGCTGGGCGCCCCTTGGCTGAGGATGTATTCGTGCATGTGGA
CATGAGTGGGGGTGACCCAGCCAGCCCCCCTGCCCCGGGCAGCCCCAATGGGGAGTGTTGCTCAGTGAGT
ACTGCAGGGGGCTCCCCGGAGGAGGAGCTGCCCCTGCCAGCCTTCGACAAGTTGAGTCCCTACCCTACCC
CGTCTCCACCACACCCATTATACCCTGGTAGGAAGGTGATAGAATTCTCTGAGGACAAGATCCGAATTCC
TCGGAACAGCCCCCTCCCCAACTGTACCTATGCCACCCGGCAGGCCATCTCCTTGAGCCTGGTGGAGGAC
GGCAGTGAGCGGGCCCACCGCAGCTCAGTGCCTAGCAGTCCTGCCTCTGCCCAAGGGTCGCCCCATCACC
AGCCTAGTCCAGCTCCCTCAGCACTGAGTGCCCCAGCTAGTTCGGCCAGCTCGGAGGAGGACCTGCTGGC
CAGCTGGCAGCGTGCATTTGTGGACCGCACCCCGCCCCCTGCTGCCGTGGTCCAGCGCACGGCCTTTGGA
CGAGACTCACTGCCCGAGCTACAATTGCATTTCTCCCCGGGCCACTCCACAGCCCCACCGCCTTCCCCGC
ACCGTGAGCGGGGACTTGTGCTGCCAGCAGAACCTGACTCTGGCTTTCCTCAAGACGAGGAAGAGGAAAT
GCTGAACCTGCCTGTCAGCCCCGAGGAAGAGCGTCAGAGCCTGCTGCCTGATAAAGAGGGCACCGAGGAG
GCCTCTGGCCCTTCTCATGTTGATGGCAGGGCCTGGCCTCTCCCCAGTCCCAGCCGCCCCCAGCGCAGCC
CCAAGAGAATGGGAGTACACCATCTCCACCGCAAGGACAGCCTGACGCAGGCACAGGAGCAGGGCACTGT
GCTCAGCTAG

Translation (539 aa):
MSSAAPAKKPYRKAPPEHRELRLEIPVSRLEQEESLTDAERMKLLQQENEELRKRLASATRRTEALEREL
EIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALIKKAEMDRKTLDWEIVELTNK
LLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKLADLPCELQDMVRKHLRSGQEVASPSPSPS
SSLSPGAVVPTSVIARVLEKPESLLLNSAQSGSAGRPLAEDVFVHVDMSGGDPASPPAPGSPNGECCSVS
TAGGSPEEELPLPAFDKLSPYPTPSPPHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVED
GSERAHRSSVPSSPASAQGSPHHQPSPAPSALSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFG
RDSLPELQLHFSPGHSTAPPPSPHRERGLVLPAEPDSGFPQDEEEEMLNLPVSPEEERQSLLPDKEGTEE
ASGPSHVDGRAWPLPSPSRPQRSPKRMGVHHLHRKDSLTQAQEQGTVLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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