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Report for CCDS40247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40247.1 Public Mus musculus 8 Defb37 23 108 98 CCDS HistoryNCBI Gene:353320Re-query CCDS DB by CCDS ID:40247.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066282.3 ENSMUSP00000067193.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066282.3Link to Ensembl Protein Viewer:ENSMUSP00000067193.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066282Re-query CCDS DB by Protein ID:ENSMUSP00000067193
Original member NCBI NM_181683.2 NP_859011.1 Updated not alive Link to Nucleotide Sequence:NM_181683.2Link to Protein Sequence:NP_859011.1Re-query CCDS DB by Nucleotide ID:NM_181683Re-query CCDS DB by Protein ID:NP_859011
Current member NCBI NM_181683.3 NP_859011.1 Accepted alive Link to Nucleotide Sequence:NM_181683.3Link to Protein Sequence:NP_859011.1Re-query CCDS DB by Nucleotide ID:NM_181683Re-query CCDS DB by Protein ID:NP_859011Link to BLAST:NP_859011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859011.1 62 Q7TMD2 62 100% 0 0

Chromosomal Locations for CCDS 40247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 18986314 18986441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18990913 18990973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (189 nt):
ATGAAGTTCTCCTACTTTCTGCTGCTGCTCCTCTCTCTATCCAACTTCCAGAACAACCCAGTTGCTATGC
TTGACACAATAGCATGTATTGAGAATAAAGACACCTGTCGCCTCAAGAACTGCCCACGCCTTCATAATGT
AGTTGGCACCTGTTATGAAGGAAAAGGCAAGTGTTGCCACAAAAACTGA

Translation (62 aa):
MKFSYFLLLLLSLSNFQNNPVAMLDTIACIENKDTCRLKNCPRLHNVVGTCYEGKGKCCHKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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