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Report for CCDS1691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1691.1 Public Homo sapiens 2 GEN1 24 110 108 CCDS HistoryNCBI Gene:348654Re-query CCDS DB by CCDS ID:1691.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1691.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317402.11 ENSP00000318977.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317402.11Link to Ensembl Protein Viewer:ENSP00000318977.7Re-query CCDS DB by Nucleotide ID:ENST00000317402Re-query CCDS DB by Protein ID:ENSP00000318977
Original member Current member EBI ENST00000381254.7 ENSP00000370653.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381254.7Link to Ensembl Protein Viewer:ENSP00000370653.2Re-query CCDS DB by Nucleotide ID:ENST00000381254Re-query CCDS DB by Protein ID:ENSP00000370653
Original member Current member NCBI NM_001130009.3 NP_001123481.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130009.3Link to Protein Sequence:NP_001123481.3Re-query CCDS DB by Nucleotide ID:NM_001130009Re-query CCDS DB by Protein ID:NP_001123481Link to BLAST:NP_001123481.3
Original member Current member NCBI NM_182625.5 NP_872431.5 Accepted alive Link to Nucleotide Sequence:NM_182625.5Link to Protein Sequence:NP_872431.5Re-query CCDS DB by Nucleotide ID:NM_182625Re-query CCDS DB by Protein ID:NP_872431Link to BLAST:NP_872431.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123481.3 908 Q17RS7 908 100% 0 0
NP_872431.5 908 Q17RS7 908 100% 0 0

Chromosomal Locations for CCDS 1691.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 17759944 17760104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17761396 17761582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17764897 17765073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17766579 17766689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17768738 17768811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17771196 17771287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17772634 17772784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17773096 17773132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17773219 17773299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17774271 17774401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17778002 17778063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17779978 17780121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17780621 17781939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGGGAGTGAATGACTTGTGGCAAATTTTGGAGCCTGTTAAGCAACACATCCCCTTGCGTAATCTTGGTG
GGAAAACCATTGCAGTTGATCTGAGTCTCTGGGTGTGTGAGGCACAGACAGTCAAAAAAATGATGGGCAG
CGTCATGAAGCCCCACCTCAGGAACTTATTTTTTCGTATCTCATATTTAACACAAATGGATGTAAAACTG
GTATTTGTTATGGAAGGGGAACCACCAAAGCTGAAAGCTGATGTCATAAGCAAGAGGAATCAGTCTCGGT
ATGGGTCTTCTGGAAAATCGTGGTCTCAGAAAACAGGGAGATCACATTTTAAATCAGTCTTAAGAGAGTG
CCTCCATATGCTCGAATGCTTAGGAATCCCCTGGGTTCAGGCTGCTGGGGAAGCTGAAGCCATGTGTGCT
TATCTCAATGCTGGTGGTCATGTCGATGGCTGCCTCACCAATGATGGAGATACTTTCCTTTATGGGGCCC
AGACTGTTTACAGGAATTTCACTATGAATACAAAGGACCCACATGTTGACTGTTACACAATGTCATCTAT
CAAGAGTAAACTAGGTTTGGATAGAGATGCTCTGGTTGGATTAGCAATACTTCTTGGCTGTGATTATCTC
CCAAAGGGAGTCCCTGGAGTTGGAAAAGAGCAAGCATTAAAACTTATACAGATTTTGAAAGGGCAAAGTT
TACTTCAGAGGTTTAATCGGTGGAATGAAACATCTTGTAACTCTAGTCCACAACTGCTAGTCACTAAAAA
ACTGGCTCATTGTTCCGTATGTTCCCATCCAGGTTCACCTAAGGATCATGAACGTAATGGATGCAGATTA
TGTAAAAGTGATAAATATTGTGAGCCACATGACTATGAATACTGCTGTCCTTGTGAGTGGCACCGTACAG
AACATGATAGGCAACTCAGTGAAGTAGAGAACAATATTAAGAAGAAAGCTTGCTGTTGTGAGGGATTCCC
ATTCCATGAGGTTATTCAAGAATTCCTTTTAAACAAGGATAAATTGGTGAAGGTTATCAGGTACCAAAGA
CCTGATTTGTTATTGTTTCAGAGATTTACTCTTGAAAAAATGGAGTGGCCCAATCACTATGCATGTGAGA
AATTGCTGGTACTTTTGACCCATTATGACATGATAGAAAGAAAGCTTGGTAGCAGAAACTCTAATCAACT
ACAGCCAATTCGAATTGTTAAGACTCGAATCAGAAATGGAGTTCATTGTTTTGAAATAGAATGGGAAAAG
CCTGAACATTATGCTATGGAAGATAAACAACATGGAGAATTTGCTTTATTAACAATTGAGGAAGAATCAT
TGTTTGAAGCAGCATATCCTGAGATCGTTGCTGTTTACCAAAAACAAAAGTTAGAAATTAAAGGGAAGAA
ACAAAAACGTATTAAGCCTAAAGAAAACAATTTGCCAGAACCAGATGAAGTAATGAGCTTTCAGTCACAC
ATGACTTTAAAACCCACATGTGAAATCTTTCATAAGCAGAATTCCAAGTTAAATTCGGGGATTTCCCCTG
ATCCTACATTACCACAGGAATCTATTTCTGCCTCATTGAATAGCTTGCTTTTACCTAAAAATACTCCATG
TTTGAATGCACAAGAACAGTTCATGTCTTCTCTAAGACCTTTGGCTATACAGCAAATTAAAGCTGTCAGT
AAGTCTCTAATTTCAGAATCTAGTCAACCCAATACCTCATCTCATAATATATCCGTGATTGCTGATCTAC
ACTTGAGCACTATTGACTGGGAAGGTACTTCTTTTAGTAATTCTCCAGCTATTCAAAGGAATACTTTTTC
TCATGATTTAAAATCAGAAGTTGAATCAGAGCTATCAGCCATCCCTGATGGCTTTGAAAATATCCCAGAA
CAACTGTCCTGTGAATCAGAAAGGTACACTGCAAACATAAAGAAAGTGTTGGATGAGGATTCTGATGGGA
TTAGTCCTGAAGAGCATCTACTTTCTGGCATTACTGATTTATGTCTTCAGGATTTGCCTTTAAAGGAACG
AATATTTACAAAATTATCATATCCTCAGGATAATCTACAACCAGATGTCAACCTGAAAACTTTGTCCATA
CTTAGTGTAAAAGAATCTTGTATTGCTAACAGTGGTTCTGATTGTACATCACATCTTTCAAAGGATCTTC
CAGGAATTCCCTTGCAAAATGAATCCAGAGACTCTAAAATTCTAAAAGGAGACCAGCTGCTTCAAGAAGA
CTATAAAGTCAATACTTCTGTCCCTTATTCTGTCAGTAACACAGTGGTAAAGACCTGCAATGTTAGACCA
CCAAATACTGCTTTAGATCATAGTAGAAAAGTTGATATGCAAACCACTCGGAAAATTTTAATGAAGAAGA
GTGTTTGCCTTGACAGACATTCCTCTGATGAACAAAGTGCCCCAGTGTTTGGGAAAGCTAAGTACACAAC
TCAAAGAATGAAGCACAGTTCTCAAAAGCATAATTCATCCCATTTCAAAGAAAGTGGCCATAACAAGTTG
AGTAGCCCTAAGATACATATTAAAGAAACTGAACAGTGTGTCAGATCTTATGAAACAGCTGAAAATGAAG
AAAGCTGTTTCCCAGATTCAACAAAAAGTTCTCTGAGTTCTCTACAATGTCATAAGAAAGAAAACAACTC
TGGTACTTGTTTGGATAGCCCTCTTCCTTTACGCCAGAGATTAAAACTAAGATTCCAAAGCACTTGA

Translation (908 aa):
MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRISYLTQMDVKL
VFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCA
YLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYL
PKGVPGVGKEQALKLIQILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRL
CKSDKYCEPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLLNKDKLVKVIRYQR
PDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEK
PEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVYQKQKLEIKGKKQKRIKPKENNLPEPDEVMSFQSH
MTLKPTCEIFHKQNSKLNSGISPDPTLPQESISASLNSLLLPKNTPCLNAQEQFMSSLRPLAIQQIKAVS
KSLISESSQPNTSSHNISVIADLHLSTIDWEGTSFSNSPAIQRNTFSHDLKSEVESELSAIPDGFENIPE
QLSCESERYTANIKKVLDEDSDGISPEEHLLSGITDLCLQDLPLKERIFTKLSYPQDNLQPDVNLKTLSI
LSVKESCIANSGSDCTSHLSKDLPGIPLQNESRDSKILKGDQLLQEDYKVNTSVPYSVSNTVVKTCNVRP
PNTALDHSRKVDMQTTRKILMKKSVCLDRHSSDEQSAPVFGKAKYTTQRMKHSSQKHNSSHFKESGHNKL
SSPKIHIKETEQCVRSYETAENEESCFPDSTKSSLSSLQCHKKENNSGTCLDSPLPLRQRLKLRFQST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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