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Report for CCDS21928.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21928.3 Public Mus musculus 7 Abraxas2 23 108 98 CCDS HistoryNCBI Gene:109359Re-query CCDS DB by CCDS ID:21928.3Re-query CCDS DB by GeneID:109359See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21928.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in other mammalian species.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21928.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084497.11 ENSMUSP00000081541.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084497.11Link to Ensembl Protein Viewer:ENSMUSP00000081541.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000084497Re-query CCDS DB by Protein ID:ENSMUSP00000081541
Original member Current member NCBI NM_198017.3 NP_932134.3 Accepted alive Link to Nucleotide Sequence:NM_198017.3Link to Protein Sequence:NP_932134.3Re-query CCDS DB by Nucleotide ID:NM_198017Re-query CCDS DB by Protein ID:NP_932134Link to BLAST:NP_932134.3

Chromosomal Locations for CCDS 21928.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132859235 132859333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132864963 132865053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132869033 132869069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132871572 132871638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132874827 132875017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132876598 132876717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132878529 132878613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132880767 132880881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132883035 132883504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGATGGGGGAGGTGGAGATTTCCATCATGGCGGCTTCCATTTCGGGCTACACCTTCAGCGCTGTGTGTT
TCCACAGCGCCAACAGCAACGCCGACCACGAAGGATTTTTGCTGGGAGAGGTAAGACAAGAGGAAACTTT
TAGCATCAGTGACTCACAAATCAGCAACACAGAGTTTCTGCAAGTAATTGAGATCCATAACCATCAGCCT
TGTTCACAACTCTTCAGTTTTTATGATTATGCGAGCAAAGTGAATGAAGAAAGTTTGGACAGAATTCTGA
AAGATCGGAGGAAGAAAGTTATCGGATGGTACAGGTTCCGGCGAAACACCCAGCAGCAGATGTCCTACAG
GGAACAGGTCATCCACAAGCAGCTCACCCGCATCCTCGGCGTGCCAGACCTGGTCTTCCTTCTCTTCAGC
TTCATCTCTACCGCCAACAATTCTACTCATGCTTTAGAATATGTTCTCTTTAGACCAAACCGCAGGTATA
ATCAAAGGATATCACTTGCTATTCCCAATCTAGGCAATACTAGCCAGCAAGAGTACAAAGTGTCTTCAGT
GCCAAACACGTCTCAGAGTTATGCCAAGGTCATTAAAGAGCACGGTACTGACTTTTTTGACAAGGATGGA
GTCATGAAGGACATCAGGGCAATTTATCAGGTTTATAATGCACTTCAGGAGAAAGTACAGGCAGTATGTG
CAGATGTAGAAAAGAGTGAGCGAGTTGTTGAATCTTGTCAGGCAGAAGTGAACAAATTGAGAAGACAAAT
CACTCAGAAGAAAAATGAAAAGGAACAAGAAAGAAGATTGCAGCAGGCCCTGTTAAGCAGACAGATGCCA
TCCGAAAGTCTGGAGCCAGCGTTCAGCCCTCGGATGTCCTATTCTGGGTTTTCAGCTGAAGGGAGAAGTA
CTCTGGCAGAAACGGAGCCCTCTGATCCTCCGCCCCCTTACTCTGATTTCCACCCAAACAATCAAGAAAG
TACTCTGAGCCATTCTCGCATGGAAAGGAGTGTCTTCATGCCCCGTCCTCAGGCTGTGGGCTCTTCCAGC
TATGCTTCCACCAGTGGCGGACTGAAGTTCACTGGAAGTGGAGCAGATCTTCTTCCTTCCCAGAGTGCAG
CTGGAGACAGTGGGGAGGAGTCAGATGACAGTGATTATGAAAATTTGATTGATCCTGCAGAGTCCCCTCA
TAGCGAATACTCACATTCAAAGAATTCACGGCCCTCGACACATCCTGACGAGGACCCCAGGAACACTCAG
ACCTCCCAGATTTAA

Translation (424 aa):
MMGEVEISIMAASISGYTFSAVCFHSANSNADHEGFLLGEVRQEETFSISDSQISNTEFLQVIEIHNHQP
CSQLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNTQQQMSYREQVIHKQLTRILGVPDLVFLLFS
FISTANNSTHALEYVLFRPNRRYNQRISLAIPNLGNTSQQEYKVSSVPNTSQSYAKVIKEHGTDFFDKDG
VMKDIRAIYQVYNALQEKVQAVCADVEKSERVVESCQAEVNKLRRQITQKKNEKEQERRLQQALLSRQMP
SESLEPAFSPRMSYSGFSAEGRSTLAETEPSDPPPPYSDFHPNNQESTLSHSRMERSVFMPRPQAVGSSS
YASTSGGLKFTGSGADLLPSQSAAGDSGEESDDSDYENLIDPAESPHSEYSHSKNSRPSTHPDEDPRNTQ
TSQI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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