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Report for CCDS6496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6496.1 Public Homo sapiens 9 IFNW1 24 110 108 CCDS HistoryNCBI Gene:3467Re-query CCDS DB by CCDS ID:6496.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380229.4 ENSP00000369578.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380229.4Link to Ensembl Protein Viewer:ENSP00000369578.2Re-query CCDS DB by Nucleotide ID:ENST00000380229Re-query CCDS DB by Protein ID:ENSP00000369578
Original member Current member NCBI NM_002177.3 NP_002168.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002177.3Link to Protein Sequence:NP_002168.1Re-query CCDS DB by Nucleotide ID:NM_002177Re-query CCDS DB by Protein ID:NP_002168Link to BLAST:NP_002168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002168.1 195 P05000 195 100% 0 0

Chromosomal Locations for CCDS 6496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21140983 21141570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCCCTCCTGTTCCCTCTACTGGCAGCCCTAGTGATGACCAGCTATAGCCCTGTTGGATCTCTGGGCT
GTGATCTGCCTCAGAACCATGGCCTACTTAGCAGGAACACCTTGGTGCTTCTGCACCAAATGAGGAGAAT
CTCCCCTTTCTTGTGTCTCAAGGACAGAAGAGACTTCAGGTTCCCCCAGGAGATGGTAAAAGGGAGCCAG
TTGCAGAAGGCCCATGTCATGTCTGTCCTCCATGAGATGCTGCAGCAGATCTTCAGCCTCTTCCACACAG
AGCGCTCCTCTGCTGCCTGGAACATGACCCTCCTAGACCAACTCCACACTGGACTTCATCAGCAACTGCA
ACACCTGGAGACCTGCTTGCTGCAGGTAGTGGGAGAAGGAGAATCTGCTGGGGCAATTAGCAGCCCTGCA
CTGACCTTGAGGAGGTACTTCCAGGGAATCCGTGTCTACCTGAAAGAGAAGAAATACAGCGACTGTGCCT
GGGAAGTTGTCAGAATGGAAATCATGAAATCCTTGTTCTTATCAACAAACATGCAAGAAAGACTGAGAAG
TAAAGATAGAGACCTGGGCTCATCTTGA

Translation (195 aa):
MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQ
LQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVVGEGESAGAISSPA
LTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTNMQERLRSKDRDLGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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