NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10153.1 Public Homo sapiens 15 RAB27A 24 110 108 CCDS HistoryNCBI Gene:5873Re-query CCDS DB by CCDS ID:10153.1Re-query CCDS DB by GeneID:5873See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10153.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336787.6 ENSP00000337761.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336787.6Link to Ensembl Protein Viewer:ENSP00000337761.1Re-query CCDS DB by Nucleotide ID:ENST00000336787Re-query CCDS DB by Protein ID:ENSP00000337761
Original member Current member EBI ENST00000396307.6 ENSP00000379601.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396307.6Link to Ensembl Protein Viewer:ENSP00000379601.2Re-query CCDS DB by Nucleotide ID:ENST00000396307Re-query CCDS DB by Protein ID:ENSP00000379601
Original member Current member EBI ENST00000564609.5 ENSP00000455012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564609.5Link to Ensembl Protein Viewer:ENSP00000455012.1Re-query CCDS DB by Nucleotide ID:ENST00000564609Re-query CCDS DB by Protein ID:ENSP00000455012
Original member Current member EBI ENST00000569493.5 ENSP00000456059.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569493.5Link to Ensembl Protein Viewer:ENSP00000456059.1Re-query CCDS DB by Nucleotide ID:ENST00000569493Re-query CCDS DB by Protein ID:ENSP00000456059
Original member Current member EBI ENST00000697642.1 ENSP00000513368.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000697642.1Link to Ensembl Protein Viewer:ENSP00000513368.1Re-query CCDS DB by Nucleotide ID:ENST00000697642Re-query CCDS DB by Protein ID:ENSP00000513368
Original member Current member EBI ENST00000697643.1 ENSP00000513369.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000697643.1Link to Ensembl Protein Viewer:ENSP00000513369.1Re-query CCDS DB by Nucleotide ID:ENST00000697643Re-query CCDS DB by Protein ID:ENSP00000513369
Original member Current member NCBI NM_004580.5 NP_004571.2 Accepted alive Link to Nucleotide Sequence:NM_004580.5Link to Protein Sequence:NP_004571.2Re-query CCDS DB by Nucleotide ID:NM_004580Re-query CCDS DB by Protein ID:NP_004571Link to BLAST:NP_004571.2
Original member Current member NCBI NM_183234.2 NP_899057.1 Accepted alive Link to Nucleotide Sequence:NM_183234.2Link to Protein Sequence:NP_899057.1Re-query CCDS DB by Nucleotide ID:NM_183234Re-query CCDS DB by Protein ID:NP_899057Link to BLAST:NP_899057.1
Original member Current member NCBI NM_183235.3 NP_899058.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183235.3Link to Protein Sequence:NP_899058.1Re-query CCDS DB by Nucleotide ID:NM_183235Re-query CCDS DB by Protein ID:NP_899058Link to BLAST:NP_899058.1
Original member Current member NCBI NM_183236.3 NP_899059.1 Accepted alive Link to Nucleotide Sequence:NM_183236.3Link to Protein Sequence:NP_899059.1Re-query CCDS DB by Nucleotide ID:NM_183236Re-query CCDS DB by Protein ID:NP_899059Link to BLAST:NP_899059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004571.2 221 P51159-1 221 100% 0 0
NP_899057.1 221 P51159-1 221 100% 0 0
NP_899058.1 221 P51159-1 221 100% 0 0
NP_899059.1 221 P51159-1 221 100% 0 0

Chromosomal Locations for CCDS 10153.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55205507 55205705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55223889 55224012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55228609 55228712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55230401 55230486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55234782 55234934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTCTGATGGAGATTATGATTACCTCATCAAGTTTTTAGCTTTGGGAGACTCTGGTGTAGGGAAGACCA
GTGTACTTTACCAATATACAGATGGTAAATTTAACTCCAAATTTATCACAACAGTGGGCATTGATTTCAG
GGAAAAAAGAGTGGTGTACAGAGCCAGTGGGCCGGATGGAGCCACTGGCAGAGGCCAGAGAATCCACCTG
CAGTTATGGGACACAGCAGGGCAGGAGAGGTTTCGTAGCTTAACGACAGCGTTCTTCAGAGATGCTATGG
GTTTTCTTCTACTTTTTGATCTGACAAATGAGCAAAGTTTCCTCAATGTCAGAAACTGGATAAGCCAGCT
ACAGATGCATGCATATTGTGAAAACCCAGATATAGTGCTGTGTGGAAACAAGAGTGATCTGGAGGACCAG
AGAGTAGTGAAAGAGGAGGAAGCCATAGCACTCGCAGAGAAATATGGAATCCCCTACTTTGAAACTAGTG
CTGCCAATGGGACAAACATAAGCCAAGCAATTGAGATGCTTCTGGACCTGATAATGAAGCGAATGGAACG
GTGTGTGGACAAGTCCTGGATTCCTGAAGGAGTGGTGCGATCAAATGGTCATGCCTCTACGGATCAGTTA
AGTGAAGAAAAGGAGAAAGGGGCATGTGGCTGTTGA

Translation (221 aa):
MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHL
QLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQ
RVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGVVRSNGHASTDQL
SEEKEKGACGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH