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Report for CCDS58920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58920.1 Public Homo sapiens 4 LAMTOR3 24 110 108 CCDS HistoryNCBI Gene:8649Re-query CCDS DB by CCDS ID:58920.1Re-query CCDS DB by GeneID:8649See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000226522.8 ENSP00000226522.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000226522.8Link to Ensembl Protein Viewer:ENSP00000226522.8Re-query CCDS DB by Nucleotide ID:ENST00000226522Re-query CCDS DB by Protein ID:ENSP00000226522
Original member Current member NCBI NM_001243736.1 NP_001230665.1 Accepted alive Link to Nucleotide Sequence:NM_001243736.1Link to Protein Sequence:NP_001230665.1Re-query CCDS DB by Nucleotide ID:NM_001243736Re-query CCDS DB by Protein ID:NP_001230665Link to BLAST:NP_001230665.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230665.1 117 Q9UHA4-2 117 100% 0 0

Chromosomal Locations for CCDS 58920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99881994 99882067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99884062 99884125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99885542 99885654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99887296 99887354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99892000 99892034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99893955 99893963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCGGATGACCTAAAGCGATTCTTGTATAAAAAGTTACCAAGTGTTGAAGGGCTCCATGCCATTGTTG
TGTCAGATAGAGATGGAGTACCTGTTATTAAAGAGCATGCTTTGCGACCTGGTTTCTTATCCACTTTTGC
CCTTGCAACAGACCAAGGAAGCAAACTTGGACTTTCCAAAAATAAAAGTATCATCTGTTACTATAACACC
TACCAGGTGGTTCAATTTAATCGTTTACCTTTGGTGGTGAGTTTCATAGCCAGCAGCAGTGCCAATACAG
GACTAATTGTCAGCCTAGAAAAGGAACTTGCTCCATTGTTTGAAGAACTGAGACAAGTTGTGGAAGTTTC
TTAA

Translation (117 aa):
MADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNT
YQVVQFNRLPLVVSFIASSSANTGLIVSLEKELAPLFEELRQVVEVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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