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Report for CCDS31117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31117.1 Public Homo sapiens 1 OR2T3 24 110 108 CCDS HistoryNCBI Gene:343173Re-query CCDS DB by CCDS ID:31117.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 31117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359594.3 ENSP00000352604.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359594.3Link to Ensembl Protein Viewer:ENSP00000352604.2Re-query CCDS DB by Nucleotide ID:ENST00000359594Re-query CCDS DB by Protein ID:ENSP00000352604
Original member Current member NCBI NM_001005495.1 NP_001005495.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005495.1Link to Protein Sequence:NP_001005495.1Re-query CCDS DB by Nucleotide ID:NM_001005495Re-query CCDS DB by Protein ID:NP_001005495Link to BLAST:NP_001005495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005495.1 318 Q8NH03 318 100% 0 0

Chromosomal Locations for CCDS 31117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248473351 248474307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTGCTCAGGGAATCAGACTTCTCAGAATCAAACAGCAAGCACTGATTTCACCCTCACGGGACTCTTTG
CTGAGAGCAAGCATGCTGCCCTCCTCTACACCGTGACCTTCCTTCTTTTCTTGATGGCCCTCACTGGGAA
TGCCCTCCTCATCCTCCTCATCCACTCAGAGCCCCGCCTCCACACCCCCATGTACTTCTTCATCAGCCAG
CTCGCGCTCATGGATCTCATGTACCTATGCGTGACTGTGCCCAAGATGCTTGTGGGCCAGGTCACTGGAG
ATGATACCATTTCCCCGTCAGGCTGTGGGATCCAGATGTTCTTCTACCTGACCCTGGCTGGAGCTGAGGT
TTTCCTCCTGGCTGCCATGGCCTATGACCGATATGCTGCTGTTTGCAGACCTCTCCATTACCCACTGCTG
ATGAACCAGAGGGTGTGCCAGCTCCTGGTGTCAGCCTGCTGGGTTTTGGGAATGGTTGATGGTTTGTTGC
TCACCCCCATTACCATGAGCTTCCCCTTTTGCCAGTCTAGGAAAATCCTGAGTTTTTTCTGTGAGACTCC
TGCCCTGCTGAAGCTCTCCTGCTCTGACGTCTCCCTCTATAAGACGCTCATGTACCTGTGCTGCATCCTC
ATGCTTCTCGCCCCCATCATGGTCATCTCCAGCTCATACACCCTCATCCTGCATCTCATCCACAGGATGA
ATTCTGCCGCCGGCCACAGGAAGGCCTTGGCCACCTGCTCCTCCCACATGATCATAGTGCTGCTGCTCTT
CGGTGCTTCCTTCTACACCTACATGCTCCCGAGTTCCTACCACACAGCTGAGCAGGACATGATGGTGTCT
GCCTTTTACACCATCTTCACTCCTGTGCTGAACCCCCTCATTTACAGTCTCCGCAACAAAGATGTCACCA
GGGCTCTGAGGAGCATGATGCAGTCAAGAATGAACCAAGAAAAGTAG

Translation (318 aa):
MCSGNQTSQNQTASTDFTLTGLFAESKHAALLYTVTFLLFLMALTGNALLILLIHSEPRLHTPMYFFISQ
LALMDLMYLCVTVPKMLVGQVTGDDTISPSGCGIQMFFYLTLAGAEVFLLAAMAYDRYAAVCRPLHYPLL
MNQRVCQLLVSACWVLGMVDGLLLTPITMSFPFCQSRKILSFFCETPALLKLSCSDVSLYKTLMYLCCIL
MLLAPIMVISSSYTLILHLIHRMNSAAGHRKALATCSSHMIIVLLLFGASFYTYMLPSSYHTAEQDMMVS
AFYTIFTPVLNPLIYSLRNKDVTRALRSMMQSRMNQEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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