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Report for CCDS46201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46201.1 Public Homo sapiens 19 RFPL4A 24 110 108 CCDS HistoryNCBI Gene:342931Re-query CCDS DB by CCDS ID:46201.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434937.3 ENSP00000392936.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000434937.3Link to Ensembl Protein Viewer:ENSP00000392936.2Re-query CCDS DB by Nucleotide ID:ENST00000434937Re-query CCDS DB by Protein ID:ENSP00000392936
Original member Current member NCBI NM_001145014.2 NP_001138486.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145014.2Link to Protein Sequence:NP_001138486.1Re-query CCDS DB by Nucleotide ID:NM_001145014Re-query CCDS DB by Protein ID:NP_001138486Link to BLAST:NP_001138486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138486.1 287 A6NLU0 287 100% 0 0

Chromosomal Locations for CCDS 46201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55761801 55762086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55762598 55763175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCTGAGCACTTCAAACAGATCATTAGATGTCCTGTCTGTCTAAAAGATCTTGAAGAAGCCGTGCAAC
TGAAATGTGGATATGCCTGCTGCCTCCAGTGCCTCAATTCACTCCAGAAGGAGCCCGATGGGGAAGGTTT
ACTGTGCCGTTTCTGCTCTGTGGTCTCTCAGAAGGATGACATCAAGCCCAAGTACAAGCTGAGGGCGCTG
GTTTCCATCATCAAGGAACTAGAGCCCAAGCTGAAATCTGTTCTAACAATGAACCCAAGGATGAGGAAGT
TTCAAGTGGATATGACGTTCGATGTGGACACAGCCAACAACTATCTCATCATTTCTGAAGACCTGAGGAG
TTTCCGAAGTGGGGATTTGAGCCAGAATAGGAAGGAGCAAGCTGAGAGGTTCGACACTGCCCTGTGCGTC
CTGGGCACCCCTCGCTTCACTTCCGGCCGCCATTACTGGGAGGTGGACGTGGGCACCAGCCAAGTGTGGG
ATGTGGGCGTGTGCAAGGAATCTGTGAACCGACAGGGGAAGATTGTGCTTTCTTCAGAACACGGCTTCTT
GACTGTGGGTTGCAGAGAAGGAAAGGTCTTTGCTGCCAGCACTGTGCCTATGACTCCTCTCTGGGTGAGT
CCCCAGTTGCACAGAGTGGGGATTTTCCTGGATGTAGGTATGAGGTCCATTGCCTTTTACAATGTTAGTG
ATGGGTGCCATATCTACACATTCATCGAGATTCCTGTTTGCGAGCCCTGGCGTCCATTTTTTGCTCATAA
ACGTGGAAGTCAAGATGATCAGAGCATCCTGAGTATCTGTTCTGTGATCAATCCATCCGCTGCCAGTGCC
CCAGTTTCTTCTGAGGGAAAGTAA

Translation (287 aa):
MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRAL
VSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCV
LGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVS
PQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASA
PVSSEGK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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