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Report for CCDS59001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59001.1 Public Homo sapiens 6 ZSCAN31 24 110 108 CCDS HistoryNCBI Gene:64288Re-query CCDS DB by CCDS ID:59001.1Re-query CCDS DB by GeneID:64288See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446474.5 ENSP00000402937.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446474.5Link to Ensembl Protein Viewer:ENSP00000402937.1Re-query CCDS DB by Nucleotide ID:ENST00000446474Re-query CCDS DB by Protein ID:ENSP00000402937
Original member Current member EBI ENST00000611469.4 ENSP00000480254.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611469.4Link to Ensembl Protein Viewer:ENSP00000480254.1Re-query CCDS DB by Nucleotide ID:ENST00000611469Re-query CCDS DB by Protein ID:ENSP00000480254
Original member Current member NCBI NM_001243242.1 NP_001230171.1 Accepted alive Link to Nucleotide Sequence:NM_001243242.1Link to Protein Sequence:NP_001230171.1Re-query CCDS DB by Nucleotide ID:NM_001243242Re-query CCDS DB by Protein ID:NP_001230171Link to BLAST:NP_001230171.1
Original member Current member NCBI NM_001243243.1 NP_001230172.1 Accepted alive Link to Nucleotide Sequence:NM_001243243.1Link to Protein Sequence:NP_001230172.1Re-query CCDS DB by Nucleotide ID:NM_001243243Re-query CCDS DB by Protein ID:NP_001230172Link to BLAST:NP_001230172.1
Original member Current member NCBI NM_001243244.1 NP_001230173.1 Accepted alive Link to Nucleotide Sequence:NM_001243244.1Link to Protein Sequence:NP_001230173.1Re-query CCDS DB by Nucleotide ID:NM_001243244Re-query CCDS DB by Protein ID:NP_001230173Link to BLAST:NP_001230173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230171.1 247 Q96LW9-2 247 100% 0 0
NP_001230172.1 247 Q96LW9-2 247 100% 0 0
NP_001230173.1 247 Q96LW9-2 247 100% 0 0

Chromosomal Locations for CCDS 59001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28326166 28326854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28327383 28327437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGTGACACAGCTCAGATATGAATCTTTTTGCCTCCACCAATTTCAAGAACAAGATGGTGAAAGTATAC
CTGAGAACCAGGAGTTGGCATCAAAGCAAGAAATCTTAAAAGAAATGGAACATTTGGGGGATAGCAAACT
CCAAAGAGATGTATCTTTGGATTCTAAGTACAGAGAAACTTGTAAACGAGACAGCAAGGCAGAAAAGCAG
CAGGCACATTCCACTGGAGAGAGACGCCACAGGTGCAATGAATGTGGGAAAAGCTTCACTAAGAGTTCAG
TACTCATTGAGCACCAGAGAATCCACACTGGGGAGAAGCCATATGAATGTGAAGAATGTGGGAAGGCCTT
CAGCCGGAGGTCAAGCCTGAATGAACATCGGCGGAGCCACACTGGAGAGAAACCCTATCAATGTAAGGAG
TGTGGGAAAGCCTTCAGTGCCAGCAATGGCCTCACTCGACACAGAAGAATCCACACAGGGGAAAAACCAT
ATGAATGCAAAGTGTGTGGGAAGGCTTTCCTCCTCAGCTCATGCCTTGTTCAGCATCAGAGGATACACAC
TGGAGAGAAGCGCTATCAGTGTCGTGAGTGTGGCAAAGCCTTCATTCAGAATGCAGGGCTTTTCCAGCAT
CTCCGAGTCCACACTGGTGAGAAACCCTATCAGTGCAGTCAGTGCAGTAAACTCTTTAGTAAGCGGACAC
TTCTTAAGAAACATCAGAAAATCCACACTGGAGAGAGACCATAA

Translation (247 aa):
MVTQLRYESFCLHQFQEQDGESIPENQELASKQEILKEMEHLGDSKLQRDVSLDSKYRETCKRDSKAEKQ
QAHSTGERRHRCNECGKSFTKSSVLIEHQRIHTGEKPYECEECGKAFSRRSSLNEHRRSHTGEKPYQCKE
CGKAFSASNGLTRHRRIHTGEKPYECKVCGKAFLLSSCLVQHQRIHTGEKRYQCRECGKAFIQNAGLFQH
LRVHTGEKPYQCSQCSKLFSKRTLLKKHQKIHTGERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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