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Report for CCDS57440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57440.1 Public Mus musculus 6 Vmn1r43 23 108 98 CCDS HistoryNCBI Gene:113847Re-query CCDS DB by CCDS ID:57440.1Re-query CCDS DB by GeneID:113847See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089418.4 ENSMUSP00000086839.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089418.4Link to Ensembl Protein Viewer:ENSMUSP00000086839.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089418Re-query CCDS DB by Protein ID:ENSMUSP00000086839
Original member Current member EBI ENSMUST00000226983.1 ENSMUSP00000153713.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226983.1Link to Ensembl Protein Viewer:ENSMUSP00000153713.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226983Re-query CCDS DB by Protein ID:ENSMUSP00000153713
Original member Current member EBI ENSMUST00000226741.1 ENSMUSP00000154439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226741.1Link to Ensembl Protein Viewer:ENSMUSP00000154439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226741Re-query CCDS DB by Protein ID:ENSMUSP00000154439
Original member Current member EBI ENSMUST00000228709.1 ENSMUSP00000154510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228709.1Link to Ensembl Protein Viewer:ENSMUSP00000154510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228709Re-query CCDS DB by Protein ID:ENSMUSP00000154510
Original member Current member NCBI NM_053220.2 NP_444450.2 Accepted alive Link to Nucleotide Sequence:NM_053220.2Link to Protein Sequence:NP_444450.2Re-query CCDS DB by Nucleotide ID:NM_053220Re-query CCDS DB by Protein ID:NP_444450Link to BLAST:NP_444450.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444450.2 329 Q8VIC9 329 100% 0 0

Chromosomal Locations for CCDS 57440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89869513 89870502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGAGTAAGATTCTGTTCTTTTCTCCTTGTTCACTGTTCTCACATACAATGAATAAGAACAGCAGACTAC
ATACTAATTCTAACATTGGGAACACATTTTTCTCTGAAATTGGCATTGGCATCACAGGAAACAGCTTCCT
TCTTCTCTACCACATCCTCAAGTTCATTCGTGGGCACAGGCCCAGACTCACTGACCTGCCCATTGGTCTC
TTGTCCCTAATCCACCTACTGATGCTTCTGGTCGCAGCATTCATAGCCACAGACATTTTTATCTCTCGGA
GGGGCTGGGATGACATCATATGTAAATTCCTTGTGTACCTGTACAGAGTTTTGAGGGGTCTCTCCCTTTG
CACCACCAGCATGTTGAGTGTCCTCCAGGCCATCATTCTTAGTCCCAGAAGCTCCTGTTTATCAAAGTTC
AAGCATATATCTCTTCATCACATCTTATGTGCTATTCTTTTCCTGAGTGTCCTCTATATGTTAATTAGCA
GTCAACTCTTGGTATCAATCATTGCCACCCCTAATTTGACCACAAATGACCTTACTTATGTTACTCAGTC
CTGCTCTATTCTACCCTTGAGTTACCTCGTGGAAAGCATAAATTCTACGCTGCTAGCCATCAGGGAATAC
TTTCTTATTAGTCTCATGTTCCTCTCAACTTGGTACATAGTGGCCCTTTTATGCATGCACAGGAAACAGA
CCCAGCATCTTCAGGAAACCAGACTTTCCCTAAAAAAATCCCCAGAGCAAAGTGCTACCCAGACCATCCT
GATGCTCATGACCTTCTTTGTGCTGATGACCATCTATGACAACATTGTCTCCTGCTTAAGAACTATGCTC
CTGAATGATCCAACATCTTACTCTATCGAACTCTTTATGATTCACATCTATGCCACTGTCAGCCCTTTTG
TGTTTATGAGCAATGAAAAACATATAGTTAACTTTTTGAGGTCCATGGGTAAGAGGATGATAAATTTGAA
TCTTCACTGA

Translation (329 aa):
MSKILFFSPCSLFSHTMNKNSRLHTNSNIGNTFFSEIGIGITGNSFLLLYHILKFIRGHRPRLTDLPIGL
LSLIHLLMLLVAAFIATDIFISRRGWDDIICKFLVYLYRVLRGLSLCTTSMLSVLQAIILSPRSSCLSKF
KHISLHHILCAILFLSVLYMLISSQLLVSIIATPNLTTNDLTYVTQSCSILPLSYLVESINSTLLAIREY
FLISLMFLSTWYIVALLCMHRKQTQHLQETRLSLKKSPEQSATQTILMLMTFFVLMTIYDNIVSCLRTML
LNDPTSYSIELFMIHIYATVSPFVFMSNEKHIVNFLRSMGKRMINLNLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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