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Report for CCDS28092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28092.1 Public Mus musculus 16 Fgf12 23 108 98 CCDS HistoryNCBI Gene:14167Re-query CCDS DB by CCDS ID:28092.1Re-query CCDS DB by GeneID:14167See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100024.2 ENSMUSP00000097601.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100024.2Link to Ensembl Protein Viewer:ENSMUSP00000097601.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100024Re-query CCDS DB by Protein ID:ENSMUSP00000097601
Original member Current member NCBI NM_183064.5 NP_898887.1 Accepted alive Link to Nucleotide Sequence:NM_183064.5Link to Protein Sequence:NP_898887.1Re-query CCDS DB by Nucleotide ID:NM_183064Re-query CCDS DB by Protein ID:NP_898887Link to BLAST:NP_898887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898887.1 243 P61329-1 243 100% 0 0

Chromosomal Locations for CCDS 28092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28162417 28162535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28189434 28189632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28372913 28373016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28398278 28398388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28444993 28445191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCTGCGGCGATAGCCAGCTCCTTGATCCGGCAGAAGCGGCAGGCGAGGGAGTCCAACAGCGACCGGG
TGTCGGCCTCCAAGCGCCGCTCCAGCCCCAGCAAAGACGGGCGCTCCCTGTGTGAGAGGCACGTCCTCGG
GGTGTTCAGCAAAGTGCGCTTCTGCAGCGGCCGCAAGAGGCCAGTGAGGCGGAGACCAGAACCCCAGCTG
AAAGGGATTGTGACAAGGTTATTCAGCCAGCAGGGATATTTCCTGCAGATGCATCCAGATGGTACCATTG
ATGGGACCAAGGACGAAAACAGCGACTACACCCTCTTCAATCTAATTCCTGTAGGACTGCGTGTGGTGGC
CATCCAAGGGGTTAAAGCCAGCCTTTATGTGGCCATGAATGGAGAAGGCTATCTCTACAGCTCAGATGTT
TTTACCCCAGAATGCAAATTTAAGGAGTCTGTGTTTGAAAACTACTATGTGATCTATTCCTCAACCCTGT
ATCGCCAGCAGGAATCAGGCCGTGCATGGTTTCTAGGACTCAATAAAGAAGGTCAAATCATGAAGGGGAA
CAGAGTGAAGAAAACCAAGCCCTCATCTCATTTTGTACCAAAACCTATTGAAGTGTGTATGTACAGAGAA
CCATCACTACACGAAATTGGAGAAAAGCAAGGACGCTCAAGGAAAAGTTCGGGAACACCCACCATGAATG
GAGGCAAAGTCGTGAATCAAGATTCTACATAA

Translation (243 aa):
MAAAIASSLIRQKRQARESNSDRVSASKRRSSPSKDGRSLCERHVLGVFSKVRFCSGRKRPVRRRPEPQL
KGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDV
FTPECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKPIEVCMYRE
PSLHEIGEKQGRSRKSSGTPTMNGGKVVNQDST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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