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Report for CCDS35369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35369.1 Public Homo sapiens X RTL4 24 110 108 CCDS HistoryNCBI Gene:340595Re-query CCDS DB by CCDS ID:35369.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35369.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340433.4 ENSP00000340590.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340433.4Link to Ensembl Protein Viewer:ENSP00000340590.2Re-query CCDS DB by Nucleotide ID:ENST00000340433Re-query CCDS DB by Protein ID:ENSP00000340590
Original member Current member EBI ENST00000695808.1 ENSP00000512188.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695808.1Link to Ensembl Protein Viewer:ENSP00000512188.1Re-query CCDS DB by Nucleotide ID:ENST00000695808Re-query CCDS DB by Protein ID:ENSP00000512188
Original member Current member EBI ENST00000695839.1 ENSP00000512211.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695839.1Link to Ensembl Protein Viewer:ENSP00000512211.1Re-query CCDS DB by Nucleotide ID:ENST00000695839Re-query CCDS DB by Protein ID:ENSP00000512211
Original member Current member NCBI NM_001004308.3 NP_001004308.2 Accepted alive Link to Nucleotide Sequence:NM_001004308.3Link to Protein Sequence:NP_001004308.2Re-query CCDS DB by Nucleotide ID:NM_001004308Re-query CCDS DB by Protein ID:NP_001004308Link to BLAST:NP_001004308.2
Original member Current member NCBI NM_001395362.2 NP_001382291.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395362.2Link to Protein Sequence:NP_001382291.1Re-query CCDS DB by Nucleotide ID:NM_001395362Re-query CCDS DB by Protein ID:NP_001382291Link to BLAST:NP_001382291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004308.2 310 Q6ZR62 310 100% 0 0
NP_001382291.1 310 Q6ZR62 310 100% 0 0

Chromosomal Locations for CCDS 35369.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112454729 112455661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAGAAGTGCACGAAATCATCATCTACCATGCAGGTAGAGCCTTCCTTTCTTCAGGCAGAGAATCTGA
TTCTGCGGCTTCAAATGCAGCATCCAACCACGGAGAACACTGCTAAAAGGGGCCAAGTCATGCCTGCCCT
GGCCACCACAGTGATGCCTGTACCATACTCACTTGAGCATCTCACCCAGTTTCATGGTGACCCTGCCAAT
TGCTCAGAGTTCCTCACTCAGGTGACTACCTACTTGACAGCTCTCCAAATCTCTAATCCTGCAAATGATG
CCCAGATCAAACTCTTTTTTGATTACCTATCTCAGCAGTTAGAAAGTTGTGGGATCATATCTGGGCCTGA
CAAGAGTACCTTACTGAAGCAATATGAGAATCTTATTCTTGAGTTCCAGCAGTCATTTGGTAAACCCACA
AAACAGGAAATCAATCCTCTGATGAATGCTAAGTTTGACAAAGGAGACAACTCCTCTCAGCAGGACCCTG
CTACTTTCCACCTCCTCGCTCAAAATCTGATCTGTAATGAAACCAATCAGAGTGGTCAGTTCGAAAAGGC
ACTAGCTGATCCCAACCAGGATGAAGAGAGTGTCACTGATATGATGGACAATCTTCCAGACCTGATCACT
CAGTGCATTCAGTTGGACAAGAAACATAGTGACAGGCCAGAGCTCCTACAGTCAGAGACCCAGCTCCCAT
TGTTGGCTTCCTTGATCCAACACCAAGCCCTCTTTAGCCCCACAGATCCACCACCCAAGAAAGGGCCTAT
ACAGCTGCGAGAAGGCCAGCTGCCTCTCACCCCAGCCAAACGAGCCCGCCAGCAAGAAACTCAGTTGTGC
CTCTACTGCAGCCAATCTGGTCACTTCACAAGAGATTGCCTTGCCAAACGTTCTCGAGCTCCGGCAACGA
CAAATAACACAGCTCACCAGTAA

Translation (310 aa):
MEKCTKSSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLTQFHGDPAN
CSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDKSTLLKQYENLILEFQQSFGKPT
KQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNETNQSGQFEKALADPNQDEESVTDMMDNLPDLIT
QCIQLDKKHSDRPELLQSETQLPLLASLIQHQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLC
LYCSQSGHFTRDCLAKRSRAPATTNNTAHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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