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Report for CCDS47718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47718.1 Public Homo sapiens 7 AGBL3 24 110 108 CCDS HistoryNCBI Gene:340351Re-query CCDS DB by CCDS ID:47718.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436302.6 ENSP00000388275.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436302.6Link to Ensembl Protein Viewer:ENSP00000388275.2Re-query CCDS DB by Nucleotide ID:ENST00000436302Re-query CCDS DB by Protein ID:ENSP00000388275
Original member Current member NCBI NM_178563.4 NP_848658.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178563.4Link to Protein Sequence:NP_848658.3Re-query CCDS DB by Nucleotide ID:NM_178563Re-query CCDS DB by Protein ID:NP_848658Link to BLAST:NP_848658.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848658.3 920 Q8NEM8-4 920 100% 0 0

Chromosomal Locations for CCDS 47718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 134987934 134987996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134989250 134989310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134993493 134993678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135017052 135017159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135032844 135032982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135034149 135034928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135037418 135037580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135044025 135044151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135045474 135045574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135045799 135045911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135059169 135059235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135076397 135076468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135080203 135080260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135081719 135081790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135115380 135115611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135134841 135135261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2763 nt):
ATGTCAGAAGATTCAGAAAAGGAAGACTATTCAGACAGAACAATCAGTGATGAAGATGAATCGGATGAGG
ATATGTTCATGAAATTTGTAAGTGAAGATCTTCATCGGTGTGCACTTTTAACAGCTGACTCTTTTGGTGA
TCCCTTCTTCCCCCGGACTACACAGATACTATTAGAATATCAGCTAGGGAGATGGGTGCCACGTCTTCGT
GAACCAAGGGATTTATATGGTGTCTCTTCTTCTGGTCCATTGAGCCCAACACGGTGGCCATACCATTGTG
AAGTCATCGATGAAAAAGTCCAGCATATTGATTGGACTCCTTCTTGTCCTGAGCCAGTGTATATCCCAAC
GGGCTTAGAAACGGAACCCCTTTATCCAGACTCCAAGGAAGCTACTGTGGTTTATCTAGCTGAAGATGCT
TACAAAGAGCCCTGTTTTGTGTATTCCCGAGTTGGGGGTAACCGAACACCTTTGAAGCAGCCTGTGGATT
ACCGTGACAATACTTTGATGTTTGAAGCAAGGTTTGAGAGTGGTAATCTACAGAAGGTAGTCAAAGTGGC
AGAATACGAATACCAATTGACTGTACGCCCTGACCTCTTCACAAATAAACACACCCAGTGGTACTATTTC
CAAGTCACTAATATGCGAGCAGGAATAGTCTACAGATTCACTATTGTCAACTTCACCAAACCTGCTAGTC
TTTACAGTCGGGGTATGCGCCCACTGTTCTATTCTGAAAAAGAGGCCAAGGCTCATCACATTGGCTGGCA
GAGAATAGGAGACCAAATCAAGTATTATAGGAACAACCCAGGCCAAGATGGGCGCCATTATTTCTCTCTT
ACATGGACATTTCAATTTCCACACAACAAAGATACCTGCTACTTTGCTCATTGCTATCCATACACTTACA
CCAACCTGCAAGAATACCTTTCTGGCATCAATAATGATCCAGTACGGTCAAAGTTTTGTAAAATACGTGT
TTTGTGCCACACGCTTGCTAGGAACATGGTGTATATTTTAACAATCACTACCCCCTTGAAGAACTCTGAC
TCAAGAAAGCGGAAGGCTGTGATTCTGACTGCAAGGGTCCATCCAGGGGAAACCAACAGCTCTTGGATCA
TGAAAGGCTTCCTAGATTATATTTTAGGAAACTCAAGTGATGCACAGTTGCTTCGGGACACTTTTGTCTT
CAAGGTGGTACCCATGCTCAATCCAGATGGTGTGATTGTGGGAAATTATCGCTGTTCCTTAGCTGGACGG
GATTTAAACCGTAATTATACATCTCTCCTGAAGGAATCTTTTCCTTCTGTATGGTATACCCGGAACATGG
TTCATAGACTGATGGAGAAACGAGAGGTTATTTTATACTGTGATCTTCATGGCCATAGTAGGAAAGAGAA
CATCTTCATGTATGGCTGTGATGGTAGTGACAGATCTAAGACATTATACTTACAGCAACGAATCTTCCCA
CTTATGCTAAGCAAAAATTGTCCAGATAAATTTTCATTCTCAGCTTGCAAGTTTAATGTCCAGAAGAGCA
AAGAAGGAACAGGAAGGGTGGTAATGTGGAAAATGGGAATCAGGAACAGCTTTACCATGGAGGCCACCTT
CTGTGGATCTACTCTGGGTAACAAACGAGGCACTCATTTCAGCACGAAAGACCTGGAATCAATGGGATAT
CATTTTTGTGATTCTCTCTTGGATTATTGTGATCCCGACCGGACCAAGTATTATCGGTGCCTGAAAGAAT
TAGAAGAAATGGAAAGACATATAACCCTGGAAAAAGTCTTTGAGGATTCAGACACACCTGTGATAGACAT
TACATTGGATGTAGAGTCTAGTAGCCGAGGCTCTGACAGTTCAGAATCCATTGACTCTCTGACTTACCTT
CTCAAGTTAACTTCTCAGAAAAAACATTTGAAAACAAAGAAGGAAAGGAATTCTACCATAGCAAGCCACC
AAAATGCCAGAGGACAAGAGGTTTATGATAGAGGGCATTTGCTGCAAAGACACACACAATCAAATTCTGA
TGTGAAAGATACAAGGCCAAATGAACCAGATGATTATATGGTTGATTATTTCAGAAGACAATTACCTAAT
CAAGGTTTGGATCTGCACCACAACTTAAAAAGCAAAATAAAAGAATGCATATCTTTCCAAAGCAAGAAGA
CTGGCATAAATTGGACAGATGATGAAAAAAGAAGCTACAAGGATAAAGGAATAGTTCAAACTCAAGAAAT
ATTGCAGTATTTGCTCCCCATCGTGCATAGCACTAAAAACATGCAAACCACTCAGATAAAACAGCTATTC
AATCCAAGAACCAACTTCCAAATCCAACATCAACTAAATCCGGCTACTTGCAGAAATATAAAGAAATACA
GCACATCTTGGACAGCACCCAGAAATCACCCTTTTGTAATCCAAGGGGATGTTATGGCAAACTCTTCAGA
ATGGGTCCAGTCTAAGCCCCACAGGTCATTGGAAAGTTTATCACCTCTCAAAGGCCCCAAGAAGAATAAA
CATTCTCAAATCTGGGCCATAAAGAATGAAGACATAAAACCTCTCAGCAGCAAGTGGGAGACTGCTTCTT
CAAGCTTTGGAATGGATGCAAATGTTCTAAAATATAAGAGTCTTCAAGCTGAAGAAACTAACCAGCAAAG
CTCTAAGCATACAGCCCTCCATCTAACTAAAAATAAGGATGAGCAGGCCAATAAGAATGATGGACAACCC
ACCTTATATCTGAAGTTCCAAAGGGAGAGTTAA

Translation (920 aa):
MSEDSEKEDYSDRTISDEDESDEDMFMKFVSEDLHRCALLTADSFGDPFFPRTTQILLEYQLGRWVPRLR
EPRDLYGVSSSGPLSPTRWPYHCEVIDEKVQHIDWTPSCPEPVYIPTGLETEPLYPDSKEATVVYLAEDA
YKEPCFVYSRVGGNRTPLKQPVDYRDNTLMFEARFESGNLQKVVKVAEYEYQLTVRPDLFTNKHTQWYYF
QVTNMRAGIVYRFTIVNFTKPASLYSRGMRPLFYSEKEAKAHHIGWQRIGDQIKYYRNNPGQDGRHYFSL
TWTFQFPHNKDTCYFAHCYPYTYTNLQEYLSGINNDPVRSKFCKIRVLCHTLARNMVYILTITTPLKNSD
SRKRKAVILTARVHPGETNSSWIMKGFLDYILGNSSDAQLLRDTFVFKVVPMLNPDGVIVGNYRCSLAGR
DLNRNYTSLLKESFPSVWYTRNMVHRLMEKREVILYCDLHGHSRKENIFMYGCDGSDRSKTLYLQQRIFP
LMLSKNCPDKFSFSACKFNVQKSKEGTGRVVMWKMGIRNSFTMEATFCGSTLGNKRGTHFSTKDLESMGY
HFCDSLLDYCDPDRTKYYRCLKELEEMERHITLEKVFEDSDTPVIDITLDVESSSRGSDSSESIDSLTYL
LKLTSQKKHLKTKKERNSTIASHQNARGQEVYDRGHLLQRHTQSNSDVKDTRPNEPDDYMVDYFRRQLPN
QGLDLHHNLKSKIKECISFQSKKTGINWTDDEKRSYKDKGIVQTQEILQYLLPIVHSTKNMQTTQIKQLF
NPRTNFQIQHQLNPATCRNIKKYSTSWTAPRNHPFVIQGDVMANSSEWVQSKPHRSLESLSPLKGPKKNK
HSQIWAIKNEDIKPLSSKWETASSSFGMDANVLKYKSLQAEETNQQSSKHTALHLTKNKDEQANKNDGQP
TLYLKFQRES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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