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Report for CCDS46964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46964.1 Public Homo sapiens 3 CCDC39 24 110 108 CCDS HistoryNCBI Gene:339829Re-query CCDS DB by CCDS ID:46964.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000476379.6 ENSP00000417960.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000476379.6Link to Ensembl Protein Viewer:ENSP00000417960.2Re-query CCDS DB by Nucleotide ID:ENST00000476379Re-query CCDS DB by Protein ID:ENSP00000417960
Original member Current member NCBI NM_181426.2 NP_852091.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181426.2Link to Protein Sequence:NP_852091.1Re-query CCDS DB by Nucleotide ID:NM_181426Re-query CCDS DB by Protein ID:NP_852091Link to BLAST:NP_852091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852091.1 941 Q9UFE4-1 941 100% 0 0

Chromosomal Locations for CCDS 46964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 180614921 180615077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180616281 180616363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180616516 180616695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180616826 180616966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180619259 180619365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180619811 180619970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180631469 180631592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180641993 180642201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180644120 180644257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180647079 180647243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180648165 180648359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180651401 180651533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180652163 180652266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180654762 180654953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180659452 180659580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180659677 180659769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180660570 180660728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180661861 180662007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180663867 180663986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180679291 180679380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGAGTAGCGAATTCCTGGCTGAGCTGCACTGGGAGGATGGGTTCGCCATCCCGGTGGCGAACGAGGAGA
ACAAGCTACTGGAAGATCAGTTGTCAAAGCTGAAGGATGAAAGAGCAAGCTTGCAAGATGAGTTACGTGA
GTATGAAGAGCGAATTAATTCTATGACTTCTCACTTCAAAAATGTTAAGCAAGAGCTCTCAATTACACAG
TCTCTTTGCAAAGCAAGGGAGCGTGAGACTGAAAGTGAAGAACATTTTAAGGCCATTGCTCAAAGAGAAT
TGGGACGAGTGAAAGATGAAATTCAACGGCTGGAAAATGAGATGGCTTCAATACTGGAAAAGAAAAGTGA
TAAAGAAAATGGCATATTTAAAGCCACTCAAAAATTGGATGGTTTGAAATGTCAAATGAACTGGGACCAG
CAAGCATTGGAGGCCTGGTTAGAAGAATCAGCTCATAAAGATAGTGATGCTCTCACTCTCCAGAAGTATG
CACAACAAGATGATAATAAAATCAGGGCACTGACTCTGCAATTAGAAAGACTAACTTTGGAATGTAATCA
GAAAAGAAAGATACTTGACAACGAACTTACAGAGACTATAAGCGCACAGTTAGAATTGGATAAAGCAGCA
CAAGATTTTCGTAAGATTCATAATGAAAGACAAGAACTCATTAAACAATGGGAGAACACAATAGAACAGA
TGCAGAAGAGGGATGGAGACATAGATAACTGTGCTTTGGAATTAGCAAGGATAAAGCAGGAAACGAGAGA
AAAAGAAAATTTGGTTAAAGAAAAGATCAAGTTTTTGGAAAGTGAGATTGGGAATAACACAGAGTTTGAG
AAAAGAATTTCTGTGGCTGATCGTAAACTTTTAAAATGTAGAACGGCATATCAGGACCATGAAACTAGTA
GAATTCAGCTGAAGGGTGAGCTGGATTCTTTAAAAGCCACTGTGAATAGAACTTCCAGTGATTTAGAAGC
TCTGAGGAAAAATATTTCCAAGATAAAGAAGGACATTCATGAAGAAACAGCAAGGTTACAAAAAACTAAA
AATCATAATGAGATAATACAAACAAAATTAAAGGAGATAACTGAGAAAACCATGTCTGTAGAAGAGAAAG
CTACTAATTTGGAAGATATGCTAAAGGAGGAGGAAAAAGATGTGAAGGAAGTAGATGTTCAACTGAACCT
CATAAAAGGTGTGCTGTTTAAGAAAGCTCAGGAGTTACAGACTGAGACAATGAAAGAAAAAGCTGTTTTA
TCAGAAATTGAAGGAACTCGTTCCTCTCTGAAACATCTCAACCATCAGTTACAAAAACTGGATTTTGAAA
CCTTGAAGCAGCAAGAAATTATGTACAGCCAGGATTTTCACATTCAACAAGTGGAACGGAGAATGTCACG
GTTAAAGGGAGAAATTAATTCAGAAGAAAAACAAGCGCTTGAAGCAAAAATTGTTGAACTTAGGAAGTCT
TTGGAAGAGAAAAAATCTACATGTGGCCTTTTGGAAACACAGATCAAGAAGCTTCATAATGATCTTTATT
TTATCAAGAAGGCACATAGTAAAAACAGTGATGAAAAACAGTCCCTTATGACCAAAATAAATGAACTAAA
CCTTTTCATCGACAGATCAGAGAAAGAACTTGATAAAGCCAAAGGTTTTAAGCAGGATTTGATGATAGAG
GACAATCTTTTAAAACTTGAAGTTAAGCGTACTCGAGAAATGCTTCACAGTAAGGCAGAAGAAGTTCTTT
CCCTAGAAAAAAGAAAACAGCAATTATACACAGCAATGGAAGAGCGAACTGAAGAAATCAAGGTTCATAA
AACAATGCTTGCGTCACAAATAAGATATGTTGATCAAGAACGGGAAAACATAAGCACTGAGTTTCGCGAG
CGGCTAAGTAAAATTGAGAAGCTGAAGAATAGATATGAAATTCTGACTGTTGTTATGCTGCCTCCTGAAG
GAGAAGAGGAGAAAACACAGGCCTATTATGTAATAAAGGCTGCTCAAGAAAAAGAAGAACTTCAAAGGGA
AGGTGACTGTTTGGATGCCAAGATCAACAAAGCTGAAAAAGAAATCTACGCTCTAGAAAATACCCTTCAA
GTGCTGAACAGCTGTAACAACAATTATAAGCAATCTTTTAAAAAAGTGACTCCATCTAGTGATGAGTATG
AGCTAAAAATTCAACTAGAAGAACAAAAAAGAGCTGTTGATGAAAAATACAGATACAAACAAAGACAAAT
CAGAGAACTTCAAGAAGACATCCAGAGCATGGAAAATACATTAGATGTTATAGAACATTTGGCAAATAAT
GTTAAAGAAAAGTTATCAGAGAAGCAGGCTTATTCATTTCAACTAAGTAAAGAAACGGAGGAGCAGAAGC
CAAAATTAGAAAGAGTGACCAAACAGTGTGCAAAACTCACAAAGGAAATCCGTCTTTTGAAAGACACAAA
AGATGAAACAATGGAAGAACAAGACATCAAACTTCGTGAAATGAAACAGTTTCACAAAGTTATTGATGAA
ATGTTAGTTGATATCATAGAAGAAAATACTGAGATCCGTATTATCCTTCAAACATACTTTCAACAGAGTG
GGTTAGAACTACCTACAGCTAGCACAAAAGGCAGTCGTCAGAGCTCTAGATCTCCTTCACATACTTCACT
ATCAGCAAGGTCATCTAGGAGTACAAGTACATCTACTTCTCAGTCTTCAATTAAAGTACTGGAGCTTAAA
TTCCCGGCCTCCTCTTCACTAGTAGGCAGCCCTTCTAGGCCATCTAGTGCTAGTAGTAGCTCTAGTAATG
TTAAGAGCAAAAAGAGCAGCAAATAA

Translation (941 aa):
MSSEFLAELHWEDGFAIPVANEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQ
SLCKARERETESEEHFKAIAQRELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQ
QALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQLERLTLECNQKRKILDNELTETISAQLELDKAA
QDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGNNTEFE
KRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTK
NHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTETMKEKAVL
SEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQALEAKIVELRKS
LEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIE
DNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQERENISTEFRE
RLSKIEKLKNRYEILTVVMLPPEGEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEKEIYALENTLQ
VLNSCNNNYKQSFKKVTPSSDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANN
VKEKLSEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEIRLLKDTKDETMEEQDIKLREMKQFHKVIDE
MLVDIIEENTEIRIILQTYFQQSGLELPTASTKGSRQSSRSPSHTSLSARSSRSTSTSTSQSSIKVLELK
FPASSSLVGSPSRPSSASSSSSNVKSKKSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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