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Report for CCDS55591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55591.1 Public Homo sapiens 1 RSPO1 24 110 108 CCDS HistoryNCBI Gene:284654Re-query CCDS DB by CCDS ID:55591.1Re-query CCDS DB by GeneID:284654See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55591.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615459.4 ENSP00000481178.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615459.4Link to Ensembl Protein Viewer:ENSP00000481178.1Re-query CCDS DB by Nucleotide ID:ENST00000615459Re-query CCDS DB by Protein ID:ENSP00000481178
Original member Current member NCBI NM_001242909.2 NP_001229838.1 Accepted alive Link to Nucleotide Sequence:NM_001242909.2Link to Protein Sequence:NP_001229838.1Re-query CCDS DB by Nucleotide ID:NM_001242909Re-query CCDS DB by Protein ID:NP_001229838Link to BLAST:NP_001229838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229838.1 236 Q2MKA7-2 236 100% 0 0

Chromosomal Locations for CCDS 55591.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37612755 37612921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37613704 37613892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37614184 37614333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37616484 37616675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37629889 37629901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGATATTCCGAGTCAGTGCCGAGGGGAGCCAGGCCTGTGCCAAAGGCTGTGAGCTCTGCTCTGAAGTCA
AC
GGCTGCCTCAAGTGCTCACCCAAGCTGTTCATCCTGCTGGAGAGGAACGACATCCGCCAGGTGGGCGT
C
TGCTTGCCGTCCTGCCCACCTGGATACTTCGACGCCCGCAACCCCGACATGAACAAGTGCATCAAATGC
AAG
ATCGAGCACTGTGAGGCCTGCTTCAGCCATAACTTCTGCACCAAGTGTAAGGAGGGCTTGTACCTGC
AC
AAGGGCCGCTGCTATCCAGCTTGTCCCGAGGGCTCCTCAGCTGCCAATGGCACCATGGAGTGCAGTAG
T
CCTGCGCAATGTGAAATGAGCGAGTGGTCTCCGTGGGGGCCCTGCTCCAAGAAGCAGCAGCTCTGTGGT
TTC
CGGAGGGGCTCCGAGGAGCGGACACGCAGGGTGCTACATGCCCCTGTGGGGGACCATGCTGCCTGCT
CT
GACACCAAGGAGACCCGGAGGTGCACAGTGAGGAGAGTGCCGTGTCCTGAGGGGCAGAAGAGGAGGAA
G
GGAGGCCAGGGCCGGCGGGAGAATGCCAACAGGAACCTGGCCAGGAAGGAGAGCAAGGAGGCGGGTGCT
GGC
TCTCGAAGACGCAAGGGGCAGCAACAGCAGCAGCAGCAAGGGACAGTGGGGCCACTCACATCTGCAG
GG
CCTGCCTAG


Translation (236 aa):
MIFRVSAEGSQACAKGCELCSEVNGCLKCSPKLFILLERNDIRQVGVCLPSCPPGYFDARNPDMNKCIKC
K
IEHCEACFSHNFCTKCKEGLYLHKGRCYPACPEGSSAANGTMECSSP
AQCEMSEWSPWGPCSKKQQLCG
F
RRGSEERTRRVLHAPVGDHAACSDTKETRRCTVRRVPCPE
GQKRRKGGQGRRENANRNLARKESKEAGA
G
SRRRKGQQQQQQQGTVGPLTSAGPA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser