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Report for CCDS9306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9306.1 Public Homo sapiens 13 C1QTNF9 24 110 108 CCDS HistoryNCBI Gene:338872Re-query CCDS DB by CCDS ID:9306.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9306.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332018.5 ENSP00000333737.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332018.5Link to Ensembl Protein Viewer:ENSP00000333737.4Re-query CCDS DB by Nucleotide ID:ENST00000332018Re-query CCDS DB by Protein ID:ENSP00000333737
Original member Current member EBI ENST00000382071.6 ENSP00000371503.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382071.6Link to Ensembl Protein Viewer:ENSP00000371503.2Re-query CCDS DB by Nucleotide ID:ENST00000382071Re-query CCDS DB by Protein ID:ENSP00000371503
Original member Current member NCBI NM_001303137.2 NP_001290066.1 Accepted alive Link to Nucleotide Sequence:NM_001303137.2Link to Protein Sequence:NP_001290066.1Re-query CCDS DB by Nucleotide ID:NM_001303137Re-query CCDS DB by Protein ID:NP_001290066Link to BLAST:NP_001290066.1
Original member Current member NCBI NM_001303138.2 NP_001290067.1 Accepted alive Link to Nucleotide Sequence:NM_001303138.2Link to Protein Sequence:NP_001290067.1Re-query CCDS DB by Nucleotide ID:NM_001303138Re-query CCDS DB by Protein ID:NP_001290067Link to BLAST:NP_001290067.1
Original member Current member NCBI NM_178540.5 NP_848635.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178540.5Link to Protein Sequence:NP_848635.2Re-query CCDS DB by Nucleotide ID:NM_178540Re-query CCDS DB by Protein ID:NP_848635Link to BLAST:NP_848635.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290066.1 333 P0C862 333 100% 0 0
NP_001290067.1 333 P0C862 333 100% 0 0
NP_848635.2 333 P0C862 333 100% 0 0

Chromosomal Locations for CCDS 9306.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24316004 24316169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24318818 24318880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24320996 24321768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGAGGATCTGGTGGCTTCTGCTTGCCATTGAAATCTGCACAGGGAACATAAACTCACAGGACACCTGCA
GGCAAGGGCACCCTGGAATCCCTGGGAACCCCGGTCACAATGGTCTGCCTGGAAGAGATGGACGAGACGG
AGCGAAGGGTGACAAAGGCGATGCAGGAGAACCAGGACGTCCTGGCAGCCCGGGGAAGGATGGGACGAGT
GGAGAGAAGGGAGAACGAGGAGCAGATGGAAAAGTTGAAGCAAAAGGCATCAAAGGTGATCAAGGCTCAA
GAGGATCCCCAGGAAAACATGGCCCCAAGGGGCTTGCAGGGCCCATGGGAGAGAAGGGCCTCCGAGGAGA
GACTGGGCCTCAGGGGCAGAAGGGGAATAAGGGTGACGTGGGTCCCACTGGTCCTGAGGGGCCAAGGGGC
AACATTGGGCCTTTGGGCCCAACTGGTTTACCGGGCCCCATGGGCCCTATTGGAAAGCCTGGTCCCAAAG
GAGAAGCTGGACCCACGGGGCCCCAGGGTGAGCCAGGAGTCCGGGGAATAAGAGGCTGGAAAGGAGATCG
AGGAGAGAAAGGGAAAATCGGTGAGACTCTAGTCTTGCCAAAAAGTGCTTTCACTGTGGGGCTCACGGTG
CTGAGCAAGTTTCCTTCTTCAGATATGCCCATTAAATTTGATAAGATCCTGTATAACGAATTCAACCATT
ATGATACAGCAGCGGGGAAATTCACGTGCCACATTGCTGGGGTCTATTACTTCACCTACCACATCACTGT
TTTCTCCAGAAATGTTCAGGTGTCTTTGGTCAAAAATGGAGTAAAAATACTGCACACCAAAGATGCTTAC
ATGAGCTCTGAGGACCAGGCCTCTGGCGGCATTGTCCTGCAGCTGAAGCTCGGGGATGAGGTGTGGCTGC
AGGTGACAGGAGGAGAGAGGTTCAATGGCTTGTTTGCTGATGAGGACGATGACACAACTTTCACAGGGTT
CCTTCTGTTCAGCAGCCCGTGA

Translation (333 aa):
MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGRPGSPGKDGTS
GEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRG
NIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTV
LSKFPSSDMPIKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAY
MSSEDQASGGIVLQLKLGDEVWLQVTGGERFNGLFADEDDDTTFTGFLLFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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