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Report for CCDS52536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52536.1 Public Mus musculus 8 Fut10 23 108 98 CCDS HistoryNCBI Gene:171167Re-query CCDS DB by CCDS ID:52536.1Re-query CCDS DB by GeneID:171167See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161788.7 ENSMUSP00000124437.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161788.7Link to Ensembl Protein Viewer:ENSMUSP00000124437.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161788Re-query CCDS DB by Protein ID:ENSMUSP00000124437
Original member NCBI NM_001286424.1 NP_001273353.1 Updated not alive Link to Nucleotide Sequence:NM_001286424.1Link to Protein Sequence:NP_001273353.1Re-query CCDS DB by Nucleotide ID:NM_001286424Re-query CCDS DB by Protein ID:NP_001273353
Current member NCBI NM_001286424.2 NP_001273353.1 Accepted alive Link to Nucleotide Sequence:NM_001286424.2Link to Protein Sequence:NP_001273353.1Re-query CCDS DB by Nucleotide ID:NM_001286424Re-query CCDS DB by Protein ID:NP_001273353Link to BLAST:NP_001273353.1
Original member NCBI NM_134161.3 NP_598922.1 Updated not alive Link to Nucleotide Sequence:NM_134161.3Link to Protein Sequence:NP_598922.1Re-query CCDS DB by Nucleotide ID:NM_134161Re-query CCDS DB by Protein ID:NP_598922
Current member NCBI NM_134161.4 NP_598922.1 Accepted alive Link to Nucleotide Sequence:NM_134161.4Link to Protein Sequence:NP_598922.1Re-query CCDS DB by Nucleotide ID:NM_134161Re-query CCDS DB by Protein ID:NP_598922Link to BLAST:NP_598922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273353.1 436 Q5F2L2-2 436 100% 0 0
NP_598922.1 436 Q5F2L2-2 436 100% 0 0

Chromosomal Locations for CCDS 52536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31195209 31195289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31201210 31201504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31235595 31236529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGTGCGGTTTCAGAGGAGGAAGCTTCTGGCCTCTTGCCTGTGTGTGACAGCGACTGTCTTTCTGATGG
TCACACTCCAGGTAGTGGTTGAGCTTGGGAAATTTGAAAGGAAGAAGCTTAAAGACTCCAATGTGCAAGA
CGGACATAGAGATGTGGAGGGAGAGCCTAAACACCTGGAGCCGTTTCCTGAAAAGGAAGCACTGGCCTTG
GCTGGGAGGACAAAGGTGGATGCTGGTAGCTACCCCATCGTGCTGTGGTGGTCCCCACTGACTGGAGAGA
CTGGCAGGCTTGGCCAGTGTGGGGCAGATGCTTGCTTCTTTACCATCAACAGGACCTTCCAGCATCATCC
GATGACCAGGGCCTTCCTATTCTACGGTACTGACTTTAACATAGACAGCTTACCTTTGCCTCGGGAAGCC
CATCATGACTGGGCGCTTTTCCATGAAGAGTCCCCCAAAAACAATTATAAGCTCTTCCATAAACCAGTCA
TCACCTTATTCAACCATACGGCCACATTCAGCAGGCATTCCCACTTGCCACTGACTACGCAGTACCTGGA
AGGCGTGGACGTCCTGAAGTCACTCAGATACCTAGTTCCTTTACAGGCTAAGAACAACCTAAGACAAAAA
CTGGCCCCATTGGTATATGTTCAGTCGGACTGCGATCCACCATCAGACAGGGACAGCTATGTCCGGGAGC
TGATGGCGTACATTGAAGTTGATTCCTATGGCGAGTGTTTACAGAACAGAGATCTTCCCCAGCAGCTGAA
AAACCCCGCCTCCATGGATGCTGATGCTTTCTACAGAGTCATTGCCCAGTATAAGTTCATCCTGGCCTTT
GAGAATGCGGTCTGTGACGATTACATCACAGAGAAGTTCTGGAGACCACTGAAACTGGGGGTCGTGCCCG
TGTATTACGGATCCCCCACCATCGCCGACTGGCTTCCAAGTAACCGAAGCGCCATTCTGGTGTCGGAATT
CTCTCACCCCAGAGAGCTGGCGAGCTTCATTAGGAGACTGGATTATGACGATGGGTTGTATGAGACCTAT
GTAGAGTGGAAGCTAAAGGGCAAGATCTCTAACCAGCGGCTTCTGACAGCTCTCAATGAACGGGAGTGGG
GTGTGCAGGACATTAACCAGGACAACTACATTGACTCGTTTGAGTGTATGGTGTGCCGCAGGGTGTGGGC
AAACAGTAGGCTGCAGGAGCAGGTGAGTGAATGGAAATCTGGGGGCTGGCATGGGCCGTCTCTCTGTGTG
GTCCTGGTCTTCCTTCTGTGGTGGTTGCCTGCCACAGGGCTCTATTCCTAG

Translation (436 aa):
MVRFQRRKLLASCLCVTATVFLMVTLQVVVELGKFERKKLKDSNVQDGHRDVEGEPKHLEPFPEKEALAL
AGRTKVDAGSYPIVLWWSPLTGETGRLGQCGADACFFTINRTFQHHPMTRAFLFYGTDFNIDSLPLPREA
HHDWALFHEESPKNNYKLFHKPVITLFNHTATFSRHSHLPLTTQYLEGVDVLKSLRYLVPLQAKNNLRQK
LAPLVYVQSDCDPPSDRDSYVRELMAYIEVDSYGECLQNRDLPQQLKNPASMDADAFYRVIAQYKFILAF
ENAVCDDYITEKFWRPLKLGVVPVYYGSPTIADWLPSNRSAILVSEFSHPRELASFIRRLDYDDGLYETY
VEWKLKGKISNQRLLTALNEREWGVQDINQDNYIDSFECMVCRRVWANSRLQEQVSEWKSGGWHGPSLCV
VLVFLLWWLPATGLYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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