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Report for CCDS28521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28521.1 Public Mus musculus 17 Sox8 23 108 98 CCDS HistoryNCBI Gene:20681Re-query CCDS DB by CCDS ID:28521.1Re-query CCDS DB by GeneID:20681See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025003.9 ENSMUSP00000025003.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025003.9Link to Ensembl Protein Viewer:ENSMUSP00000025003.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025003Re-query CCDS DB by Protein ID:ENSMUSP00000025003
Original member Current member NCBI NM_011447.3 NP_035577.1 Accepted alive Link to Nucleotide Sequence:NM_011447.3Link to Protein Sequence:NP_035577.1Re-query CCDS DB by Nucleotide ID:NM_011447Re-query CCDS DB by Protein ID:NP_035577Link to BLAST:NP_035577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035577.1 464 Q04886 464 100% 0 0

Chromosomal Locations for CCDS 28521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25567333 25568081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25568828 25569060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25570110 25570522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGCTGGACATGAGTGAGGCCCGCGCCCAGCCTCCCTGCAGCCCGTCTGGCACCGCTAGCTCCATGTCAC
AC
GTGGAGGATTCGGACTCCGACGCGCCACCGTCGCCCGCGGGATCAGAGGGCCTGGGCCGCGCGGGGGG
C
GGCGGCCGAGGGGATACTGCTGAGGCAGCAGACGAACGCTTCCCAGCCTGCATCCGTGATGCCGTGTCG
CAG
GTGCTTAAGGGTTATGACTGGAGTCTGGTGCCTATGCCTGTGCGCGGCGGCGGTGGCGGCACGCTCA
AG
GCCAAGCCACACGTGAAGCGGCCCATGAATGCCTTCATGGTGTGGGCACAGGCGGCGCGCCGCAAGCT
G
GCGGACCAGTACCCGCATCTCCATAACGCAGAGCTCAGCAAGACCCTAGGCAAGCTGTGGCGCTTGCTG
AGT
GAAAGCGAGAAGAGGCCGTTTGTGGAGGAGGCCGAGAGGCTCCGTGTGCAGCACAAGAAAGACCACC
CA
GATTACAAATACCAGCCAAGGCGAAGGAAGAGTGTGAAGACTGGCCGGAGCGACTCAGACTCTGGTAC
T
GAACTGGGCCACCACCCTGGTGGTCCCATGTACAAAGCTGATGCAGTGCTCGGCGAGGCACACCATCAC
AGT
GACCACCACACAGGCCAGACCCATGGGCCACCCACCCCACCCACTACCCCCAAGACGGACCTGCACC
AG
GCGAGCAATGGAAGCAAGCAAGAGCTAAGGCTGGAAGGGCGCCGCCTAGTGGACAGCGGGCGCCAGAA
C
ATCGACTTCAGCAATGTGGACATCTCCGAGCTCAGCAGCGAGGTTATCAGTAACATGGATACCTTCGAT
GTC
CATGAATTTGACCAGTACTTGCCCCTCAATGGCCACTCAGCCCTGCCCACAGAGCCCAGCCAGGCCA
CT
GCCTCTGGCTCCTATGGAGGCGCTTCCTACTCGCACTCCGGGGCAACCGGCATAGGGGCATCCCCTGT
G
TGGGCCCACAAGGGAGCTCCCTCGGCTTCAGCTTCGCCCACAGAGGCAGGACCCCTTCGGCCACAGATC
AAG
ACGGAGCAGCTGAGTCCTAGCCACTACAACGACCAGTCACATGGCTCACCTGGCCGTGCTGACTATG
GC
TCTTACAGTGCCCAGGCCAGCGTCACCACAGCTGCCTCTGCCACGGCTGCCAGCTCCTTCGCCAGCGC
A
CAGTGTGATTACACTGACCTGCAGGCTTCCAACTACTACAGCCCCTACCCTGGCTACCCTCCCAGCCTC
TAC
CAATACCCTTACTTCCATTCATCCCGTCGGCCCTATGCCTCGCCACTGCTCAATGGGCTCTCTATGC
CA
CCCGCACACAGCCCCAGCAGCAACTGGGACCAGCCTGTGTACACCACCCTGACCCGACCCTGA


Translation (464 aa):
MLDMSEARAQPPCSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGGGGRGDTAEAADERFPACIRDAVS
Q
VLKGYDWSLVPMPVRGGGGGTLKAKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLW
RLL
S
ESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKTGRSDSDSGTELGHHPGGPMYKADAVLGEAHHH
S
DHHT
GQTHGPPTPPTTPKTDLHQASNGSKQELRLEGRRLVDSGRQNIDFSNVDISELSSEVISNMDTFD
V
HEFDQYLPLNGHSALPTEPSQATASGSYGGASYSHSGATGIGASPVWAHKGAPSASASPTEAGPLRPQI
K
TEQLSPSHYNDQSHGSPGRADYGSYSAQASVTTAASATAASSFASAQCDYTDLQASNYYSPYPGYPPSL
Y
QYPYFHSSRRPYASPLLNGLSMPPAHSPSSNWDQPVYTTLTRP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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