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Report for CCDS47199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47199.1 Public Homo sapiens 5 EGFLAM 24 110 108 CCDS HistoryNCBI Gene:133584Re-query CCDS DB by CCDS ID:47199.1Re-query CCDS DB by GeneID:133584See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47199.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397210.7 ENSP00000380393.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397210.7Link to Ensembl Protein Viewer:ENSP00000380393.3Re-query CCDS DB by Nucleotide ID:ENST00000397210Re-query CCDS DB by Protein ID:ENSP00000380393
Original member Current member EBI ENST00000514476.1 ENSP00000423228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514476.1Link to Ensembl Protein Viewer:ENSP00000423228.1Re-query CCDS DB by Nucleotide ID:ENST00000514476Re-query CCDS DB by Protein ID:ENSP00000423228
Original member Current member EBI ENST00000506135.5 ENSP00000425579.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506135.5Link to Ensembl Protein Viewer:ENSP00000425579.1Re-query CCDS DB by Nucleotide ID:ENST00000506135Re-query CCDS DB by Protein ID:ENSP00000425579
Original member Current member NCBI NM_182801.3 NP_877953.1 Accepted alive Link to Nucleotide Sequence:NM_182801.3Link to Protein Sequence:NP_877953.1Re-query CCDS DB by Nucleotide ID:NM_182801Re-query CCDS DB by Protein ID:NP_877953Link to BLAST:NP_877953.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877953.1 152 Q63HQ2-5 152 100% 0 0

Chromosomal Locations for CCDS 47199.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38451343 38451458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38458311 38458394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38462908 38463011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38463832 38463986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGAGGTTTAAAACAACTGCCAAGGATGGCCTTTTGCTGTGGAGGGGAGACAGCCCCATGAGACCCAACA
GCGACTTCATTTCCTTGGGCCTTCGGGATGGAGCCCTCGTGTTCAGCTATAACCTGGGCAGTGGTGTGGC
ATCCATCATGGTGAATGGCTCCTTCAACGATGGTCGGTGGCACCGAGTTAAGGCCGTTAGGGATGGCCAG
TCAGGAAAGATAACCGTGGATGACTATGGAGCCAGAACAGGCAAATCCCCAGGCATGATGCGGCAGCTTA
ACATCAATGGAGCTCTGTATGTGGGTGGAATGAAGGAAATTGCTCTGCACACTAACAGGCAATATATGAG
AGGGCTCGTGGGCTGTATCTCTCACTTCACCCTGTCCACCGATTACCACATTTCCCTCGTGGAAGATGCC
GTGGATGGGAAAAACATCAACACTTGTGGAGCCAAGTAA

Translation (152 aa):
MRFKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSYNLGSGVASIMVNGSFNDGRWHRVKAVRDGQ
SGKITVDDYGARTGKSPGMMRQLNINGALYVGGMKEIALHTNRQYMRGLVGCISHFTLSTDYHISLVEDA
VDGKNINTCGAK


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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