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Report for CCDS47685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47685.1 Public Homo sapiens 7 SYPL1 24 110 108 CCDS HistoryNCBI Gene:6856Re-query CCDS DB by CCDS ID:47685.1Re-query CCDS DB by GeneID:6856See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455385.7 ENSP00000388336.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455385.7Link to Ensembl Protein Viewer:ENSP00000388336.2Re-query CCDS DB by Nucleotide ID:ENST00000455385Re-query CCDS DB by Protein ID:ENSP00000388336
Original member Current member NCBI NM_182715.4 NP_874384.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182715.4Link to Protein Sequence:NP_874384.1Re-query CCDS DB by Nucleotide ID:NM_182715Re-query CCDS DB by Protein ID:NP_874384Link to BLAST:NP_874384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_874384.1 241 Q16563-2 241 100% 0 0

Chromosomal Locations for CCDS 47685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 106091805 106091939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106092949 106093137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106097690 106097897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106099158 106099282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106112140 106112208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGTCCGGCTTCCAGATCAACCTCAACCCGCTCAAGGAGCCACTCGGCTTCATCAAGGTCCTCGAGTGGA
TTGCTTCTATCTTTGCTTTTGCCACCTGTGGAGGTTTTAAGGGCCAAACAGAAATTCAAGTGAATTGTCC
TCCTGCAGTTACTGAGAATAAAACTGTTACAGCTACTTTTGGTTATCCATTCAGGTTGAATGAGGCATCA
TTTCAGCCACCTCCAGGTGTAAACATATGTGATGTAAATTGGAAAGATTACGTCCTCATAGGCGATTACT
CTTCTTCTGCACAATTCTATGTTACCTTTGCAGTCTTTGTGTTCCTGTACTGCATTGCTGCCCTTCTGCT
TTATGTTGGCTACACGAGTCTGTATCTGGATAGTCGTAAACTTCCTATGATAGACTTTGTTGTTACACTT
GTTGCCACTTTTTTGTGGTTGGTGAGCACTTCAGCCTGGGCTAAAGCTCTGACAGATATTAAAATAGCTA
CTGGTCACAATATTATTGATGAACTTCCGCCTTGTAAGAAGAAAGCAGTACTGTGTTACTTTGGCTCTGT
GACCAGTATGGGATCCCTAAATGTATCTGTGATATTTGGCTTTCTAAATATGATACTCTGGGGAGGAAAT
GCTTGGTTTGTGTACAAGGAGACCAGCCTACACAGTCCATCAAATACATCTGCCCCTCATAGCCAAGGAG
GTATTCCACCTCCTACCGGAATATAA

Translation (241 aa):
MSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATFGYPFRLNEAS
FQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSLYLDSRKLPMIDFVVTL
VATFLWLVSTSAWAKALTDIKIATGHNIIDELPPCKKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGN
AWFVYKETSLHSPSNTSAPHSQGGIPPPTGI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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