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Report for CCDS28741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28741.1 Public Mus musculus 17 Or1o2 23 108 98 CCDS HistoryNCBI Gene:258505Re-query CCDS DB by CCDS ID:28741.1Re-query CCDS DB by GeneID:258505See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073667.5 ENSMUSP00000094937.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073667.5Link to Ensembl Protein Viewer:ENSMUSP00000094937.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073667Re-query CCDS DB by Protein ID:ENSMUSP00000094937
Original member Current member EBI ENSMUST00000207414.2 ENSMUSP00000146667.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207414.2Link to Ensembl Protein Viewer:ENSMUSP00000146667.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207414Re-query CCDS DB by Protein ID:ENSMUSP00000146667
Original member Current member EBI ENSMUST00000214622.1 ENSMUSP00000149629.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214622.1Link to Ensembl Protein Viewer:ENSMUSP00000149629.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214622Re-query CCDS DB by Protein ID:ENSMUSP00000149629
Original member Current member EBI ENSMUST00000214848.1 ENSMUSP00000150081.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214848.1Link to Ensembl Protein Viewer:ENSMUSP00000150081.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214848Re-query CCDS DB by Protein ID:ENSMUSP00000150081
Original member Current member EBI ENSMUST00000213328.1 ENSMUSP00000150892.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213328.1Link to Ensembl Protein Viewer:ENSMUSP00000150892.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213328Re-query CCDS DB by Protein ID:ENSMUSP00000150892
Original member Current member EBI ENSMUST00000216225.1 ENSMUSP00000151044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216225.1Link to Ensembl Protein Viewer:ENSMUSP00000151044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216225Re-query CCDS DB by Protein ID:ENSMUSP00000151044
Original member Current member NCBI NM_146512.2 NP_666723.1 Accepted alive Link to Nucleotide Sequence:NM_146512.2Link to Protein Sequence:NP_666723.1Re-query CCDS DB by Nucleotide ID:NM_146512Re-query CCDS DB by Protein ID:NP_666723Link to BLAST:NP_666723.1

Chromosomal Locations for CCDS 28741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37231436 37232368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGATGAACTGCAGTCAGGCTCCTGGCTTCATCCTGTTGGGACTGTCCAGTAACTCAGAGAAATGGCAAC
CCCTCTTTAGCATCTTCCTTGTTCTCTACTTGCTGGGCCTTTTAGGGAACCTGCTACTTTTGTTAGCTAT
TGGCACTGATGTCCACCTCCACACCCCCATGTATTTCTTCCTCAGTCAGCTCTCACTCGTGGATCTTTGC
TTCATCACCACCACAGCCCCTAAAATGCTGGAGACTCTGTGGACTGGAGATGGATCCATCTCGTTCTCTG
GATGCCTGACTCAGTTGTACTTCTTTGCTGTTTTTGCTGACATGGATAACCTGCTTCTAGCAGTCATGGC
TATTGACCGCTATGCTGCTATCTGCCACCCACTGCTGTACCCACTTCTAATGACTCCTTGTAGATGTAGA
GTTCTGGTCAGTGGGTCGTGGGGAGTAGCTCATTGTGTGTCTCTGACCCATATTTTGTTGCTCTCTCAGT
TATATTTTCATACCAATCAAGAAATTCCTCATTTTTTCTGTGACTTTGGGCCTCTCTTATTGCTTTCCTG
CTCTGATGCTCACCTCAATGAGAGTCTAATGATGGCTTTGGCTGGAGTTTTGGGAATCAGTGCACTGCTC
TGCATTGTAAGTTCTTATGGTTGTATTTTTTATGCTGTGGCTAAGGTTCCATCAGCACAGGGAAAAAGGA
AAGCCTTGGCTACATGCAGTTCCCACCTCTCTGTAGTCCTCCTATTCTATAGCACAGTCTTTGCTACCTA
CCTGAAACCCCCATCTAGTTCTCGTTCCTCTGGGGAGGTGGTAGCTGCTGTTATGTATACCTTGGTCACT
CCCACTCTAAACCCCTTCATTTATAGTCTGAGAAACAAGGATGTTAAGAGTTCATTGAGAAGGATCTTGA
ACATGGTGAAATCTCAGGACTAA

Translation (310 aa):
MMNCSQAPGFILLGLSSNSEKWQPLFSIFLVLYLLGLLGNLLLLLAIGTDVHLHTPMYFFLSQLSLVDLC
FITTTAPKMLETLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCR
VLVSGSWGVAHCVSLTHILLLSQLYFHTNQEIPHFFCDFGPLLLLSCSDAHLNESLMMALAGVLGISALL
CIVSSYGCIFYAVAKVPSAQGKRKALATCSSHLSVVLLFYSTVFATYLKPPSSSRSSGEVVAAVMYTLVT
PTLNPFIYSLRNKDVKSSLRRILNMVKSQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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