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Report for CCDS15173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15173.1 Public Mus musculus 1 Or9s15 23 108 98 CCDS HistoryNCBI Gene:258483Re-query CCDS DB by CCDS ID:15173.1Re-query CCDS DB by GeneID:258483See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073748.3 ENSMUSP00000073422.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073748.3Link to Ensembl Protein Viewer:ENSMUSP00000073422.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000073748Re-query CCDS DB by Protein ID:ENSMUSP00000073422
Original member Current member EBI ENSMUST00000190844.2 ENSMUSP00000140373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190844.2Link to Ensembl Protein Viewer:ENSMUSP00000140373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190844Re-query CCDS DB by Protein ID:ENSMUSP00000140373
Original member Current member EBI ENSMUST00000216444.1 ENSMUSP00000150254.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216444.1Link to Ensembl Protein Viewer:ENSMUSP00000150254.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216444Re-query CCDS DB by Protein ID:ENSMUSP00000150254
Original member Current member NCBI NM_146490.1 NP_666701.1 Accepted alive Link to Nucleotide Sequence:NM_146490.1Link to Protein Sequence:NP_666701.1Re-query CCDS DB by Nucleotide ID:NM_146490Re-query CCDS DB by Protein ID:NP_666701Link to BLAST:NP_666701.1

Chromosomal Locations for CCDS 15173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92596521 92597492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCCATAGCAGTCTACAGGAATGGAAGCCTCTCAGCAGTGTCCTTGCAGGGGTTCGTGCTGGTGGGAT
TTGGGGGGGGTGCAGAGACCCAGGCCCTGCTCTTTGCTGTGTTCCTTGTCCTGTACGTGGTCACCATCCT
GGGAAACCTCACCATGATCGTGGTCATCACCCTGGATGCCCGCCTGCACTCCCCCATGTACTTCTTCCTC
AAGAACCTGTCCTTTGTCGACCTCTGTTACTCCTCTGCCATTGCCCCTAATGCCCTGGCCAACTTCCTCT
CCACCTCCAAAGTCATCAGCTTTGAGGCTTGTGCCACTCAGCTCTTCTTCTTCTCCTTGTTGGCTACCAC
TGAGGCTTTCCTCTTAGCTGTGATGGCCTATGACCGTTTCATGGCCATCTGCAGTCCTCTGAGGTACCCT
GTGACCATGTGCCCTACAACCTGTACCCGTCTGGTGCTGGGCACCTACTGTGGTGGCTGCCTGAACTCCA
TTGTGCAGACCAGCCTCACGTTCCAGCTGCCCTTCTGCAGCTCCAACCGTATTGACCACTTCTACTGTGA
CGTTCCCCCACTGCTCCAGCTGGCCTGCGCCAGCACGGCTCTCAATGAGCTCTTTCTCTTCGGCCTCTGT
GGGTTCATCATTGTGAGCACCACCTTAGCTGTCCTGGTTTCCTATGGCTACATCACTGTGACCATTCTCA
GGATGCACTCGGGATCTGGGAGGCACAAGGTCTTCTCCACCTGTGGCTCTCATATGATGGCTGTGTCCTT
GTTTTATGGAACTGTGTTTGTCATGTATGCCCAGCCTGGAGCAGTGGCATCCATGGCACAGGGCAAGGTG
ATATCTGTCTTCTACACCCTGGTCATCCCCATGCTCAACCCCCTCATCTACAGTCTGAGGAACAAGGATG
TGAAGGACGCCCTGAGGAGGCTGGGACAGAGACACAGCCTTGTGAAGAAAGGAGGCAAGTAG

Translation (323 aa):
MAIAVYRNGSLSAVSLQGFVLVGFGGGAETQALLFAVFLVLYVVTILGNLTMIVVITLDARLHSPMYFFL
KNLSFVDLCYSSAIAPNALANFLSTSKVISFEACATQLFFFSLLATTEAFLLAVMAYDRFMAICSPLRYP
VTMCPTTCTRLVLGTYCGGCLNSIVQTSLTFQLPFCSSNRIDHFYCDVPPLLQLACASTALNELFLFGLC
GFIIVSTTLAVLVSYGYITVTILRMHSGSGRHKVFSTCGSHMMAVSLFYGTVFVMYAQPGAVASMAQGKV
ISVFYTLVIPMLNPLIYSLRNKDVKDALRRLGQRHSLVKKGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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