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Report for CCDS3660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3660.1 Public Homo sapiens 4 UBE2D3 24 110 108 CCDS HistoryNCBI Gene:7323Re-query CCDS DB by CCDS ID:3660.1Re-query CCDS DB by GeneID:7323See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3660.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321805.11 ENSP00000318494.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000321805.11Link to Ensembl Protein Viewer:ENSP00000318494.7Re-query CCDS DB by Nucleotide ID:ENST00000321805Re-query CCDS DB by Protein ID:ENSP00000318494
Original member Current member EBI ENST00000338145.7 ENSP00000337208.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338145.7Link to Ensembl Protein Viewer:ENSP00000337208.3Re-query CCDS DB by Nucleotide ID:ENST00000338145Re-query CCDS DB by Protein ID:ENSP00000337208
Original member Current member EBI ENST00000349311.12 ENSP00000344069.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349311.12Link to Ensembl Protein Viewer:ENSP00000344069.8Re-query CCDS DB by Nucleotide ID:ENST00000349311Re-query CCDS DB by Protein ID:ENSP00000344069
Original member Current member EBI ENST00000394801.8 ENSP00000378280.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394801.8Link to Ensembl Protein Viewer:ENSP00000378280.4Re-query CCDS DB by Nucleotide ID:ENST00000394801Re-query CCDS DB by Protein ID:ENSP00000378280
Original member Current member EBI ENST00000394803.9 ENSP00000378282.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394803.9Link to Ensembl Protein Viewer:ENSP00000378282.5Re-query CCDS DB by Nucleotide ID:ENST00000394803Re-query CCDS DB by Protein ID:ENSP00000378282
Original member Current member EBI ENST00000394804.6 ENSP00000378283.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394804.6Link to Ensembl Protein Viewer:ENSP00000378283.2Re-query CCDS DB by Nucleotide ID:ENST00000394804Re-query CCDS DB by Protein ID:ENSP00000378283
Original member Current member EBI ENST00000453744.7 ENSP00000396901.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000453744.7Link to Ensembl Protein Viewer:ENSP00000396901.2Re-query CCDS DB by Nucleotide ID:ENST00000453744Re-query CCDS DB by Protein ID:ENSP00000396901
Original member Current member NCBI NM_003340.6 NP_003331.1 Accepted alive Link to Nucleotide Sequence:NM_003340.6Link to Protein Sequence:NP_003331.1Re-query CCDS DB by Nucleotide ID:NM_003340Re-query CCDS DB by Protein ID:NP_003331Link to BLAST:NP_003331.1
Original member Current member NCBI NM_181886.3 NP_871615.1 Accepted alive Link to Nucleotide Sequence:NM_181886.3Link to Protein Sequence:NP_871615.1Re-query CCDS DB by Nucleotide ID:NM_181886Re-query CCDS DB by Protein ID:NP_871615Link to BLAST:NP_871615.1
Original member Current member NCBI NM_181887.3 NP_871616.1 Accepted alive Link to Nucleotide Sequence:NM_181887.3Link to Protein Sequence:NP_871616.1Re-query CCDS DB by Nucleotide ID:NM_181887Re-query CCDS DB by Protein ID:NP_871616Link to BLAST:NP_871616.1
Original member Current member NCBI NM_181888.3 NP_871617.1 Accepted alive Link to Nucleotide Sequence:NM_181888.3Link to Protein Sequence:NP_871617.1Re-query CCDS DB by Nucleotide ID:NM_181888Re-query CCDS DB by Protein ID:NP_871617Link to BLAST:NP_871617.1
Original member Current member NCBI NM_181889.2 NP_871618.1 Accepted alive Link to Nucleotide Sequence:NM_181889.2Link to Protein Sequence:NP_871618.1Re-query CCDS DB by Nucleotide ID:NM_181889Re-query CCDS DB by Protein ID:NP_871618Link to BLAST:NP_871618.1
Original member Current member NCBI NM_181890.3 NP_871619.1 Accepted alive Link to Nucleotide Sequence:NM_181890.3Link to Protein Sequence:NP_871619.1Re-query CCDS DB by Nucleotide ID:NM_181890Re-query CCDS DB by Protein ID:NP_871619Link to BLAST:NP_871619.1
Original member Current member NCBI NM_181891.3 NP_871620.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181891.3Link to Protein Sequence:NP_871620.1Re-query CCDS DB by Nucleotide ID:NM_181891Re-query CCDS DB by Protein ID:NP_871620Link to BLAST:NP_871620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003331.1 147 P61077-1 147 100% 0 0
NP_871615.1 147 P61077-1 147 100% 0 0
NP_871616.1 147 P61077-1 147 100% 0 0
NP_871617.1 147 P61077-1 147 100% 0 0
NP_871618.1 147 P61077-1 147 100% 0 0
NP_871619.1 147 P61077-1 147 100% 0 0
NP_871620.1 147 P61077-1 147 100% 0 0

Chromosomal Locations for CCDS 3660.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102797415 102797460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102799407 102799500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102801454 102801559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102802561 102802638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102809672 102809703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102809792 102809855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102826485 102826508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGCGCTGAAACGGATTAATAAGGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAG
GTCCAGTTGGGGATGATATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGG
CGGTGTATTCTTTTTGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACA
ACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCGATATTCTAAGATCACAGTGGT
CGCCTGCTTTAACAATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCAAACCCAGATGA
CCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGATAAGTACAACAGAATATCTCGGGAA
TGGACTCAGAAGTATGCCATGTGA

Translation (147 aa):
MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT
TRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE
WTQKYAM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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