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Report for CCDS37087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37087.1 Public Mus musculus 15 Gsdmc2 23 108 98 CCDS HistoryNCBI Gene:331063Re-query CCDS DB by CCDS ID:37087.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089900.9 ENSMUSP00000087344.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089900.9Link to Ensembl Protein Viewer:ENSMUSP00000087344.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089900Re-query CCDS DB by Protein ID:ENSMUSP00000087344
Original member Current member EBI ENSMUST00000188691.1 ENSMUSP00000140487.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188691.1Link to Ensembl Protein Viewer:ENSMUSP00000140487.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188691Re-query CCDS DB by Protein ID:ENSMUSP00000140487
Original member Current member EBI ENSMUST00000188404.6 ENSMUSP00000141066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188404.6Link to Ensembl Protein Viewer:ENSMUSP00000141066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188404Re-query CCDS DB by Protein ID:ENSMUSP00000141066
Original member Current member NCBI NM_001168274.1 NP_001161746.1 Accepted alive Link to Nucleotide Sequence:NM_001168274.1Link to Protein Sequence:NP_001161746.1Re-query CCDS DB by Nucleotide ID:NM_001168274Re-query CCDS DB by Protein ID:NP_001161746Link to BLAST:NP_001161746.1
Original member Current member NCBI NM_177912.4 NP_808580.2 Accepted alive Link to Nucleotide Sequence:NM_177912.4Link to Protein Sequence:NP_808580.2Re-query CCDS DB by Nucleotide ID:NM_177912Re-query CCDS DB by Protein ID:NP_808580Link to BLAST:NP_808580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161746.1 480 Q2KHK6 480 100% 0 0
NP_808580.2 480 Q2KHK6 480 100% 0 0

Chromosomal Locations for CCDS 37087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 63824878 63825156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63825666 63825739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63826165 63826294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63826786 63826931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63827764 63827790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63828024 63828053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63828165 63828266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63830762 63830867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63833314 63833476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63834930 63835107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63835736 63835943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGGCTACAGTTTTGACCGGGCTAGCAAGGATGTGGTTAAAAAGCTTCAAGGAAGAGATCTGAGGCCTG
TGGAATGCTTGTCCGATGCAACCAAATTCCGCCTATTTCACATACTCCAGGAGACTCCTCGATCAGGTTG
GGAAACTGAAGATATTCCAGTTGGATTTACCCTTCTGGATCTCTTGGAGCCCAACTTTCCTGTTCCAGAG
CCTGAAGTGTCTGCTCCCAAGCCCTTCATACATGTCCAATCAACGGACCTGGAGGCTAACTTGAATGTCG
CAGACATTGCAAGAGGAGGTGTAGGGTATGTTGGGTACGGTGGATACAACATCGAGGTTCAGAGTACAAG
CATCCCAAATCCAAAACTGGAAATTCTTCAAAACAGGAAACTGTTGGATAATTTGCCCACATTTATGAAG
TTTTGCCGGATGGAAAGGAAGAACCTGTATGTGGTGACAGAGGCCTATGAAGTGTCCAAGGATACTATGC
TGACAGGCTTAAGCAGTGTCAATCTTTCAGTTAAAGGGTTCTTCAAACAGCTTTTCAAGGTTCGAGGCAA
GGCGGGAAGGTCGGAAAAGTATTCAATACCTATCCCAAAGGGTTCGGTGTTGGCCTATAAGAAGCAGCAA
CTTGTCATTGAGAATAACACTTGTGTCATTCTCCCTTCTGCTACTAAGAAGAAGATGACTTTTCCAGGCA
CACCTAAGTACGCTTCTGCTTCCGAACCCACTGAGATTTATAGAACAGAATTGCAAGGCTTGTGGATAAA
TGACATCGTTCCAATTGGAAGAATACAGGAGCCCGCCCATCTAGATTTCATGTGCCTACAAAATGAAGTT
TACAAACAAACAGAGCAACTGGCTGAACTCTCAAAGGGTGTTCAAGAAGTTGTGTTGTCCAGTATCCTGT
CCATGCTCTATGAAGGTGACAGGAAAGTTCTGTATGACCTGATGAACATGCTGGAGTTGAATCAGTTGGG
GCATATGGATGGCCCAGGTGGCAAAATCCTGGATGAGCTGCGAAAGGATTCTAGCAACCCATGTGTTGAC
CTAAAGGACCTCATTCTTTATCTCCTTCAAGCTCTGATGGTGCTGAGCGATAGCCAACTCAATCTGCTGG
CCCAGTCTGTGGAGATGGGGATCCTCCCGCACCAAGTAGAGCTGGTAAAGAGCATCTTACAGCCAAACTT
CAAGTATCCCTGGAACATTCCCTTCACACTCCAGCCTCAGCTTCTTGCCCCACTCCAGGGTGAGGGCTTG
GCCATTACTTATGAATTGCTGGAGGAGTGTGGTCTGAAGATGGAGCTGAATAATCCCAGGTCAACTTGGG
ATTTGGAAGCCAAAATGCCCCTGTCTGCTCTCTATGGAAGCCTGTCATTTTTACAGCAACTTCGGAAGGC
TAACTCTTCCTCCAAGCCCAGCCTACGTCCTGGATACATTTGA

Translation (480 aa):
MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPE
PEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDNLPTFMK
FCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLSVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQ
LVIENNTCVILPSATKKKMTFPGTPKYASASEPTEIYRTELQGLWINDIVPIGRIQEPAHLDFMCLQNEV
YKQTEQLAELSKGVQEVVLSSILSMLYEGDRKVLYDLMNMLELNQLGHMDGPGGKILDELRKDSSNPCVD
LKDLILYLLQALMVLSDSQLNLLAQSVEMGILPHQVELVKSILQPNFKYPWNIPFTLQPQLLAPLQGEGL
AITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLRKANSSSKPSLRPGYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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