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Report for CCDS38716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38716.1 Public Mus musculus 4 Myorg 23 108 98 CCDS HistoryNCBI Gene:329828Re-query CCDS DB by CCDS ID:38716.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054920.4 ENSMUSP00000059038.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054920.4Link to Ensembl Protein Viewer:ENSMUSP00000059038.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054920Re-query CCDS DB by Protein ID:ENSMUSP00000059038
Original member Current member NCBI NM_001085515.2 NP_001078984.1 Accepted alive Link to Nucleotide Sequence:NM_001085515.2Link to Protein Sequence:NP_001078984.1Re-query CCDS DB by Nucleotide ID:NM_001085515Re-query CCDS DB by Protein ID:NP_001078984Link to BLAST:NP_001078984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078984.1 716 Q69ZQ1 716 100% 0 0

Chromosomal Locations for CCDS 38716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41497478 41499628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGTCCCAGAACCTTCAGGAGACAAGCCAGGCCTACCCCCGACATCGACCTGGTAGCCACGCAGGCCCTA
AA
AGTCTCAAAGTTACCCCACGAGCAACCATGTACACTTTCCTGCCTGACAATTTTTCACCTGCCAAACC
C
AAGCCCACTAAAGAGCTGAGACCTCTGCTGTGCTCCGCGGTACTGGGACTGCTACTGGTGTTGGCCGCA
GTT
GTGGCCTGGTGCTACTACAGTGCCTCCCTACGCAAAGCTGAACGCCTGCGCGCGGAGCTGCTGGACC
TG
AACCGTGGCGGCTTCTCCATCCGTAACCAGAAGGGTGAGCAAGTCTTCCGCTTGGCCTTCCGTTCCGG
T
GCTCTAGACCTTGACTCCTGCAGCCGGGATGGTGCGCTGCTTGGCTGCTCCCGAGCGGCCGACGGACGC
CCG
TTGCACTTCTTTATTCAGACAGTACGACCTAAGGACACTGTAATGTGCTACCGCGTGCGCTGGGAGG
AA
GCTGTGCCAGGGCGTGCTGTGGAGCACGCGATGTTTCTGGGAGATGCTGCGGCGCACTGGTATGGCGG
C
GCAGAGATGAGGACGCAACACTGGCCCATCCGCCTAGATGGCCAGCAAGAACCGCAGCCATTTGTCACG
AGC
GACGTCTATTCATCTGACGCCGCATTCGGGGGCATCCTTGAGCGCTACTGGTTATCTTCACGCGCCG
CT
GCCATCAAAGTCAATGATTCAGTGCCCTTCCACCTGGGCTGGAATAGCACGGAGCGTTCGATGAGACT
G
CAGGCACGCTACCACGACACATCTTACAAGCCACCAGCTGGCCGTACTGCCGCGCCAGAGCTCAGCTAC
CGC
GTGTGCGTGGGCTCAGATGTCACTTCCATCCACAAGTACATGGTTCGACGTTACTTCAACAAGCCAT
CC
AGGGTACCAGCGTCAGAGGCCTTCCGAGACCCCATTTGGTCCACGTGGGCACTGCATGGGCGCGCTGT
G
GACCAGAACAAGGTGCTGCAATTCGCCCAGCAGATCCGCCAGCACCGCTTTAATAGCAGCCACCTGGAA
ATC
GATGACATGTACACGCCCGCCTATGGCGACTTTAATTTCGACGAGGGCAAGTTTCCCAACGCCAGTG
AC
ATGTTCCGCCGCCTGCGAGATGCCGGCTTCCGCGTCACACTTTGGGTGCATCCGTTTGTCAACTATAA
C
TCGTCGAGCTTCGGCGAAGGTGTGGAGCGCGAGCTGTTCGTGCGCGAGCCCACGGGCCGGCTGCCCGCG
CTG
GTGCGCTGGTGGAACGGTATTGGCGCAGTGCTGGACTTCACGCACCCAGAGGCCCGAGAGTGGTTCC
AG
GGACACCTACGGCGCCTGCGCTTGCGCTACAACGTGACCTCCTTTAAGTTCGACGCGGGTGAGGTCAG
C
TACCTGCCCAGGGACTTCAGCACCTACAGGCCTCTGTCTGACCCCAGTGTGTGGAGCAGGCGGTACACC
GAG
ATGGCGGAGCCCTTCTTCTCGCTAGCCGAGGTCCGCGTGGGGTACCAGTCACAGAACATCTCCTGCT
TC
TTCCGTCTAGTGGACCGCGACTCGGTATGGGGCTACGACCTGGGGCTGCGCTCTCTTATCCCTGCGGT
G
CTCACCGTCAGTATGCTGGGCTATCCGTTCATCTTGCCCGATATGATAGGTGGCAACGCGGTGCCGGAG
CGC
ACAGCCGGCCGCCAAGATGGGCCGGGGCCAGAGCGCGAGCTCTACGTGCGCTGGCTGGAGGTGGCCG
CC
TTCATGCCTGCCATGCAGTTTTCAATCCCTCCTTGGCAGTACGACGCAGAAGTGGTAGCCATCGCACA
C
AAATTCGCTGCTCTGCGCGCCTCCCTCGTGGCGCCACTGCTGCTAGAGCTTGCTGGTGAGATCACCGAC
ACT
GGCGACCCCATCGTGCGCCCCCTGTGGTGGATCGCACCGGGGGATGAAACGGCCCATCGCATTGACT
CA
CAGTTTCTCATCGGGGACACGCTGTTGGTGGCGCCGGTGCTAGAGCCTGGTAAGCAAGAGCGTGATGT
C
TACCTGCCTGCCGGCAAATGGCGAAGCTACAAGGGTGAACTTTTTGACAAGACGCCGGTGCTGCTCACG
GAT
TACCCTGTCGACCTGGATGAGGTCGCCTATTTCACCTGGGCTTCCTGA


Translation (716 aa):
MSQNLQETSQAYPRHRPGSHAGPKSLKVTPRATMYTFLPDNFSPAKPKPTKELRPLLCSAVLGLLLVLAA
V
VAWCYYSASLRKAERLRAELLDLNRGGFSIRNQKGEQVFRLAFRSGALDLDSCSRDGALLGCSRAADGR
P
LHFFIQTVRPKDTVMCYRVRWEEAVPGRAVEHAMFLGDAAAHWYGGAEMRTQHWPIRLDGQQEPQPFVT
S
DVYSSDAAFGGILERYWLSSRAAAIKVNDSVPFHLGWNSTERSMRLQARYHDTSYKPPAGRTAAPELSY
R
VCVGSDVTSIHKYMVRRYFNKPSRVPASEAFRDPIWSTWALHGRAVDQNKVLQFAQQIRQHRFNSSHLE
I
DDMYTPAYGDFNFDEGKFPNASDMFRRLRDAGFRVTLWVHPFVNYNSSSFGEGVERELFVREPTGRLPA
L
VRWWNGIGAVLDFTHPEAREWFQGHLRRLRLRYNVTSFKFDAGEVSYLPRDFSTYRPLSDPSVWSRRYT
E
MAEPFFSLAEVRVGYQSQNISCFFRLVDRDSVWGYDLGLRSLIPAVLTVSMLGYPFILPDMIGGNAVPE
R
TAGRQDGPGPERELYVRWLEVAAFMPAMQFSIPPWQYDAEVVAIAHKFAALRASLVAPLLLELAGEITD
T
GDPIVRPLWWIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPAGKWRSYKGELFDKTPVLLT
D
YPVDLDEVAYFTWAS




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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