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Report for CCDS89657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89657.1 Public Mus musculus 3 Dcst2 23 108 98 CCDS HistoryNCBI Gene:329702Re-query CCDS DB by CCDS ID:89657.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208216.1 ENSMUSP00000146838.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208216.1Link to Ensembl Protein Viewer:ENSMUSP00000146838.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208216Re-query CCDS DB by Protein ID:ENSMUSP00000146838
Original member Current member NCBI NM_001370853.1 NP_001357782.1 Accepted alive Link to Nucleotide Sequence:NM_001370853.1Link to Protein Sequence:NP_001357782.1Re-query CCDS DB by Nucleotide ID:NM_001370853Re-query CCDS DB by Protein ID:NP_001357782Link to BLAST:NP_001357782.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357782.1 701 A0A140LIJ0 701 100% 0 0

Chromosomal Locations for CCDS 89657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89365400 89365631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89365742 89365912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89366220 89366321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89366649 89366846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89367158 89367223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89367721 89367934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89368091 89368248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89368705 89368869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89370428 89370595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89370700 89370800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89371533 89371663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89372648 89372775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89373223 89373316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89373425 89373580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89377430 89377451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGAGGAGGGGTCCAGCACGGCACGGGCCGTGGTCCGTAGTACCTGTGGCTTTACCGTGGGTTTGTCCT
TGGCCACCGCCTTTGGGCTCCTAGAGCTTCTAGGGGAAGGACACAGCCCCTTTGGCTGCCTGGTGACCAC
CGTCACTTTGGCTGCCTTCCTGAGCTTGGGCATGGGGTTCTCCCGGCAGGTCCGCGTCTCTGTGCTCTTG
CTGCTTCCACAGGCCTTCTCCAAGCAGAGCCGGTTGCTGCTACTGGTAGCTTCCTTTGGGCTGGTGCTAC
AAGGGCCTTGTGCGAACACCCTGCAGAACTTCACCCGGGCAAGTGAAGCTGTGGCTTGTGGGGCAGAGCT
GGCCCTGAACCAGACGGCTGAAATGCTGGAGCGGGCCAAGCAGCCCCTTATCAGTGCTCTGTCTAAGATT
AAAGCTATTGCCCAGAAGGCCAAAGTGGTGGGTGACCGGATACGCAAGTTCTTCCGGTCCATTATAGATG
CCGTGAAACACATAGCCAGGTGCCTGCAGAATGTGTGGTATTGGCTCCTTCATATTGGTGATATGTGCAA
CTCCGAGCTGGGCAACCCTTACTCAAAATGCACACAGGTGTTTGATGATGCCAAGATCCACTGTATGAAG
GTCGTTTCGGGATTCCCTCACCTGTGTTATGCGCTCTTGCCCTACAAACTGCTGGTCTGTGGACTTGCCA
GCTTGGTCCAGAAATTCTGTGTCTTGCCTTCCTACCTCGAATTTTTCCTGCGAACGGTCATCCGCACTCC
CGTGATGAAACTGCTTGGCAAGCTACGTCGAGAGTTTGAGTTCAACATGACAGCCACCCACTACTTCTCT
GTGGACCTCAATTCCTCTCGGAGCCTGTCCCAGGTGGCTTTGGACCTGCAGGAGGCTGTCAGCATGAAGT
TGTACACTGCCAGGGAGGCGCTGTCTTTGATGGGCTACACCATGCCTCTGCTTATTGGATTTCTCTACAT
CCAAGCCCTGTGTTACCGGTACTATTATCTGAACTCCGACAAATTCGACAATGTCTATATTACCAGGCGC
TTCCTAGACATGGAGGCAGTACGCTCCCTTGCAGGGATGCCTACGGTGCTGCCTCTCAGTTCTCATGAGG
CCAAACACTACATCCAGCCAGACTCCATGTTCCTGAGCCAGCGGGAACAGATGTTTTATACCTTGGAGAT
CTTTAACCTCACCCGCCATCTCCTCATCATGCTCCTCCTGGTCTTTCTGGACTATGGCGTCTTCTGGCTA
CTTGATCTGGCCCGGTACCACCTCCAGGGCGAGATTGTAGCCCGCAGCCCTGTGGTAGTGTCTATATCGG
TGGAAGGGTCCGGCTACTCAGGGAATATTTACCGTGACCTGGCGTCAGCGTTTGATGTTATGCAACAAGG
CAACGTCAGTGTATTGTCGCCGCGCTGCACCCTGCACCCCTCAGAACCGGATGCTAAGGGTTACATCGTT
ATTGGTACCATGTACGGTCTGTGCTTCTTCGTCACTCTGTTTGGCAGCTATGTCAGCAGGCTGCGGCGTG
CTATCTGTGCCTCCTATTACCCCAGCAGGGAACAGGAAAGGATCACCTACCTTTACAACATGCTTCTGAG
CCATCGGACCAACATAACGGCGACAGTGCAGCGAGCAGTGAGGCGACGGTCAGCTGACCAAGGCCAAATG
AATATCCTCCAGGTGCTGGCCATCCGGTTGCCTTTTCTAAGGCCATTGCTTGGCCCGTTTTCGCTGCAGC
AGTCTTACTGCATGGGCTGTGGGGAGCCTGAAGACAAAGGGGGCATGGAGAACTTTGTGTCCTGCAGTAC
CCCAGGCTGCAGAGGTCTCTACTGCCCTACCTGTTTCCGTCTCCTAAACAACACCTGTTCTGTGTGTTCT
GCTCCACTCTCCAACCAGGGGCACCTGGACCTGGAGCTGGACTCCAGTGATGAGGAGAGTCCTCAGCTGT
GGCTGGCTGCAGCTCGAAGAAAGGCCCCCGAGCAGGAGCTGAAACTTCGACAACAGCTTCAGGAAGCACT
GGGCACGAACCTTTCAGACAAGTCCACCTCCAAGCCCGAGCGAGCAGGAAACAGGAACCAGGACAGAAAG
CAGTGA

Translation (701 aa):
MEEGSSTARAVVRSTCGFTVGLSLATAFGLLELLGEGHSPFGCLVTTVTLAAFLSLGMGFSRQVRVSVLL
LLPQAFSKQSRLLLLVASFGLVLQGPCANTLQNFTRASEAVACGAELALNQTAEMLERAKQPLISALSKI
KAIAQKAKVVGDRIRKFFRSIIDAVKHIARCLQNVWYWLLHIGDMCNSELGNPYSKCTQVFDDAKIHCMK
VVSGFPHLCYALLPYKLLVCGLASLVQKFCVLPSYLEFFLRTVIRTPVMKLLGKLRREFEFNMTATHYFS
VDLNSSRSLSQVALDLQEAVSMKLYTAREALSLMGYTMPLLIGFLYIQALCYRYYYLNSDKFDNVYITRR
FLDMEAVRSLAGMPTVLPLSSHEAKHYIQPDSMFLSQREQMFYTLEIFNLTRHLLIMLLLVFLDYGVFWL
LDLARYHLQGEIVARSPVVVSISVEGSGYSGNIYRDLASAFDVMQQGNVSVLSPRCTLHPSEPDAKGYIV
IGTMYGLCFFVTLFGSYVSRLRRAICASYYPSREQERITYLYNMLLSHRTNITATVQRAVRRRSADQGQM
NILQVLAIRLPFLRPLLGPFSLQQSYCMGCGEPEDKGGMENFVSCSTPGCRGLYCPTCFRLLNNTCSVCS
APLSNQGHLDLELDSSDEESPQLWLAAARRKAPEQELKLRQQLQEALGTNLSDKSTSKPERAGNRNQDRK
Q


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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