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Report for CCDS56998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56998.1 Public Mus musculus 15 Gramd4 23 108 98 CCDS HistoryNCBI Gene:223752Re-query CCDS DB by CCDS ID:56998.1Re-query CCDS DB by GeneID:223752See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138134.7 ENSMUSP00000120796.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138134.7Link to Ensembl Protein Viewer:ENSMUSP00000120796.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138134Re-query CCDS DB by Protein ID:ENSMUSP00000120796
Original member Current member NCBI NM_001205353.1 NP_001192282.1 Accepted alive Link to Nucleotide Sequence:NM_001205353.1Link to Protein Sequence:NP_001192282.1Re-query CCDS DB by Nucleotide ID:NM_001205353Re-query CCDS DB by Protein ID:NP_001192282Link to BLAST:NP_001192282.1

Chromosomal Locations for CCDS 56998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 86058933 86058961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86091313 86091523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86100780 86100900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86118463 86118583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86122179 86122252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86125124 86125256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86125857 86125882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86126989 86127080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86127550 86127641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86128665 86128713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86129650 86129721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86130147 86130190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86130257 86130366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86130503 86130657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86131854 86131998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86132815 86132908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86133675 86133759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86134786 86134949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86135350 86135416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGAGAGTTGGCCCCGATCATCCCGCAGGGGAGCCTCCCCGTCATGTCCAGGTGAGGCCGAGGAGTGCCG
TGCTGAACATGCTCAGGAGGCTGGATAGGATCAGGTTCAGAGGACACAAGAGAGAGGACCTCCTTGATCT
AGCCGAGTCCCCAAATGCCTCGGACACCGAGTGCGGAGACGAGATCCCCCTGAAGACGCCACGGCCCTCG
CCCCGGGACAGTGAGGAGCTCAGGGACCCTGCTGGTCCAGGGACCCTCATCATGGCGGCAGGCGTGCAGG
ACTTCAACAGGACAGAGTTCGATCGACTGAACGAGATCAAGGGCCATCTGGAAATCGCCTTACTGGAAAA
GCACTTTCTTCAGGAGGAGCTCCGGAAGCTTCGAGAAGAGACCAACTCAGAGATGCTGCGGCAGGAGCTG
GATCGGGAGCGGCAGCGCCGGATCGAACTGGAACAGAAAATGCAGGAGGTGCTAAAGGCCAGGTCCGAGG
AGCAGCCAGCACAGCCTCAGCAGCCACCAAAGGGACAGAGCCAGGCCAGCAATGGCACAGGCACAGAGCG
CCGCAGCCAGGGCTTGGCCTCCCGTGTACAGAAGTGGTTCTATGAGAGGTTTGGGGAATACATCGAGGAC
TTCCGCTTCCAACCAGAGGAGAACACAGTAGAGACGGAGGAGCCCCTCAGCGCCCGCAGGTTAACTGAAA
ACATGAGAAGACTGAAGCGCGGTGCCAAGCCTGTCACTAACTTCGTGAAGAACCTGTCTGCCTTATCTGA
CTGGTACTCCATCTACACCTCCGCCATCGCCTTCACGGTATACATGAATGCTGTGTGGCACGGCTGGGCC
ATCCCCATGTTCCTGTTCCTAGCAATTCTGAGGTTGTCCCTCAATTACCTCATCGCCAGGGGCTGGCGGA
TACAATGGAGCATTGTGCCGGAAGTGTCTGAAGCTGTGGAACCCGCAAAGGAAGATCTGACCGTGTCTGA
GAAGTTCCAGCTGGTGCTGGATGTGGCCCAGAAAGCACAGAATCTCTTCGGCAAGATGGCCGACATCCTG
GAAAAGATCAAGAACTTGTTCATGTGGGTGCAACCTGAGACCACGCAGAAGCTCTATGTTGCCCTGTGGG
CCGCCTTTCTGGCTTCTTGCTTCTTCCCCTACCGCCTGGTGGGGCTTGCTGTTGGCCTCTATGCCGGCAT
CAAGTTTTTCTTAATTGACTTCATCTTCAAACGCTGCCCAAGACTTCGAGCCAAGTATGACACCCCCTAT
ATCATCTGGAGGAGCCTGCCCACTGACCCTCAGCTCAAAGAGCGTGCTGGTGCCACCGTGTCACGCAGGC
TGCAGACAGCCTCATCACGGAGCTACGTCTCCAGTGCTCCAGCTGGTCTGAGTAAGGACGAAGATGCTGG
ACGCTTTCACAGCACCAAGAAGGGGAACTTCCACGAAATCTTCAACTTGACTGAAAACGAGCGCCCGCTA
GCAGTGTGCGAGAATGGCTGGCGCTGCTGCCTCATTAACCGAGACCGGAAGATGCCCACGGACTACATCA
GGAACGGGGTTCTGTATGTGACAGAGAATTACCTGTGCTTCGAGAGCTCCAAGTCTGGGTCATCAAAGAG
GAACAAGGTGATCAAACTGATGGACATCACAGACATCCAGAAGGAGGAGAGCGTCCTGGACGAGTGGGGA
CTAGCATCACCCCTGTCCTTAGGAGAAGCTGGTGGCCCGGTGGCAATGGTTGTACTCTTTCATTTCAGTA
TAAAGTCTTGTCTGTCCTCCCTGGCTCAGGCATGGGAATTGCTGTTTCTACACCATCAACCCAGAAACCC
CTGGTGTTCGGTGCCATGGTGCACAGAGATGAAGCCTTTGAGACCATTTTCAGCCAGTATGTGA

Translation (627 aa):
MRVGPDHPAGEPPRHVQVRPRSAVLNMLRRLDRIRFRGHKREDLLDLAESPNASDTECGDEIPLKTPRPS
PRDSEELRDPAGPGTLIMAAGVQDFNRTEFDRLNEIKGHLEIALLEKHFLQEELRKLREETNSEMLRQEL
DRERQRRIELEQKMQEVLKARSEEQPAQPQQPPKGQSQASNGTGTERRSQGLASRVQKWFYERFGEYIED
FRFQPEENTVETEEPLSARRLTENMRRLKRGAKPVTNFVKNLSALSDWYSIYTSAIAFTVYMNAVWHGWA
IPMFLFLAILRLSLNYLIARGWRIQWSIVPEVSEAVEPAKEDLTVSEKFQLVLDVAQKAQNLFGKMADIL
EKIKNLFMWVQPETTQKLYVALWAAFLASCFFPYRLVGLAVGLYAGIKFFLIDFIFKRCPRLRAKYDTPY
IIWRSLPTDPQLKERAGATVSRRLQTASSRSYVSSAPAGLSKDEDAGRFHSTKKGNFHEIFNLTENERPL
AVCENGWRCCLINRDRKMPTDYIRNGVLYVTENYLCFESSKSGSSKRNKVIKLMDITDIQKEESVLDEWG
LASPLSLGEAGGPVAMVVLFHFSIKSCLSSLAQAWELLFLHHQPRNPWCSVPWCTEMKPLRPFSASM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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