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Report for CCDS27093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27093.1 Public Mus musculus 14 Ajuba 23 108 98 CCDS HistoryNCBI Gene:16475Re-query CCDS DB by CCDS ID:27093.1Re-query CCDS DB by GeneID:16475See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27093.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054487.9 ENSMUSP00000056977.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054487.9Link to Ensembl Protein Viewer:ENSMUSP00000056977.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054487Re-query CCDS DB by Protein ID:ENSMUSP00000056977
Original member Current member NCBI NM_010590.5 NP_034720.2 Accepted alive Link to Nucleotide Sequence:NM_010590.5Link to Protein Sequence:NP_034720.2Re-query CCDS DB by Nucleotide ID:NM_010590Re-query CCDS DB by Protein ID:NP_034720Link to BLAST:NP_034720.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034720.2 547 Q91XC0 547 100% 0 0

Chromosomal Locations for CCDS 27093.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54568931 54569056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54569476 54569544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54570245 54570296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54570377 54570507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54571601 54571663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54571766 54571833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54573392 54573493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54576232 54577264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGGAACGGTTAGGGGAGAAAGCCAGTCGTCTGCTAGAAAAGTTGAGACTCTCGGACTCCGGCAGCGCCA
AGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTGGGTCTGATGGGACCCCCGGAGCAGGCAAGGGACG
CTTAAGCGGGTTGGGGGGACCTAGGAAGTCAGGACACCGTGGAGCGAATGGGGGGCCTGGAGATGAACCT
TTGGAACCGGCCAGGGAGCAAGGGCCCCTGGACGCCGAGCGGAACGCACGCGGCTCCTTTGAAGCGCAGC
GCTTCGAAGGGTCCTTTCCCGGGGGGCCGCCGCCCACTCGAGCCCTGCCTCTGCCTCTGTCGTCGCCTCC
TGATTTTCGGCTGGAGACCACGGCTCCAGCCCTTAGCCCTCGCTCCAGCTTCGCCAGTAGCTCGGCCAGC
GATGCGAGCAAGCCATCTAGCCCCCGGGGCAGCCTGCTGCTGGACGGAGCCGGGGCCAGCGGAGCCGGAG
GTAGCCGGCCGTGCAGCAATCGGACCAGCGGCATCAGCATGGGCTACGACCAGCGCCACGGGAGCCCGCT
GCCCGCGGGGCCGTGCCTATTCGGCCTCCCGCTGACCACTGCTCCTGCGGGCTACCCTGGAGGGGCTCCG
TCCGCCTACCCGGAGCTCCACGCTGCCCTGGACCGACTATGTGCCCATCGGTCCGTGGGATTCGGCTGCC
AGGAGAGCCGTCACTCGTACCCCCCGGCCCTGGGCAGCCCCGGAGCTCTAACCGGAGCCGTGGTGGGAAC
AGCGGGTCCTTTGGAGAGACGTGGGGCGCAACCCGGACGACACTCGGTTACAGGCTACGGGGACTGCGCC
GCGGGGGCCCGTTACCAGGACGAGCTAACAGCATTGCTGCGTTTGACCGTGGCTACCGGTGGGCGAGAAG
CGGGTGCTCGCGGGGAACCCTCGGGGATTGAGCCGTCGGGTCTGGAGGAGTCTCCTGGTCCCTTCGTTCC
AGAGGCCTCCCGATCACGGATACGGGAGCCAGAGGCCAGAGAAGATTACTTTGGCACCTGTATCAAGTGC
AACAAAGGTATCTATGGGCAGAGCAATGCCTGCCAGGCCCTGGACAGCCTCTACCACACCCAGTGCTTTG
TCTGCTGCTCCTGTGGACGAACTTTGCGGTGCAAGGCTTTCTACAGCGTCAATGGCTCTGTCTACTGTGA
GGAAGACTATCTGTTTTCAGGGTTTCAGGAGGCAGCTGAGAAGTGCTGTGTCTGCGGCCACTTGATTCTA
GAGAAGATCCTCCAGGCCATGGGGAAGTCCTATCACCCGGGCTGCTTCCGATGCATCGTATGTAACAAGT
GCCTGGACGGCGTCCCCTTCACTGTGGACTTCTCCAACCAGGTGTACTGTGTTACCGACTACCACAAAAA
TTACGCCCCGAAATGTGCAGCCTGCGGACAACCCATCCTCCCCTCAGAGGGCTGTGAGGACATTGTGAGG
GTGATATCCATGGACCGTGATTATCACTTTGAGTGCTACCACTGTGAGGACTGCCGCATGCAGCTGAGTG
ACGAGGAAGGTTGCTGCTGTTTCCCTCTTGATGGACATTTGCTCTGCCACGGCTGTCACATGCAGCGCCT
CAGTGCCCGGCAGCCCTCTACCAACTATATCTGA

Translation (547 aa):
MERLGEKASRLLEKLRLSDSGSAKFGRRKGEASRSGSDGTPGAGKGRLSGLGGPRKSGHRGANGGPGDEP
LEPAREQGPLDAERNARGSFEAQRFEGSFPGGPPPTRALPLPLSSPPDFRLETTAPALSPRSSFASSSAS
DASKPSSPRGSLLLDGAGASGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGLPLTTAPAGYPGGAP
SAYPELHAALDRLCAHRSVGFGCQESRHSYPPALGSPGALTGAVVGTAGPLERRGAQPGRHSVTGYGDCA
AGARYQDELTALLRLTVATGGREAGARGEPSGIEPSGLEESPGPFVPEASRSRIREPEAREDYFGTCIKC
NKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLIL
EKILQAMGKSYHPGCFRCIVCNKCLDGVPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVR
VISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLSARQPSTNYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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