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Report for CCDS33850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33850.1 Public Homo sapiens 3 RAB43 24 110 108 CCDS HistoryNCBI Gene:339122Re-query CCDS DB by CCDS ID:33850.1Re-query CCDS DB by GeneID:339122See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33850.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315150.10 ENSP00000319781.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315150.10Link to Ensembl Protein Viewer:ENSP00000319781.6Re-query CCDS DB by Nucleotide ID:ENST00000315150Re-query CCDS DB by Protein ID:ENSP00000319781
Original member Current member EBI ENST00000393304.5 ENSP00000376981.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393304.5Link to Ensembl Protein Viewer:ENSP00000376981.1Re-query CCDS DB by Nucleotide ID:ENST00000393304Re-query CCDS DB by Protein ID:ENSP00000376981
Original member Current member EBI ENST00000393305.5 ENSP00000376982.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393305.5Link to Ensembl Protein Viewer:ENSP00000376982.1Re-query CCDS DB by Nucleotide ID:ENST00000393305Re-query CCDS DB by Protein ID:ENSP00000376982
Original member Current member EBI ENST00000393307.5 ENSP00000376984.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393307.5Link to Ensembl Protein Viewer:ENSP00000376984.1Re-query CCDS DB by Nucleotide ID:ENST00000393307Re-query CCDS DB by Protein ID:ENSP00000376984
Original member Current member EBI ENST00000393308.5 ENSP00000376985.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393308.5Link to Ensembl Protein Viewer:ENSP00000376985.1Re-query CCDS DB by Nucleotide ID:ENST00000393308Re-query CCDS DB by Protein ID:ENSP00000376985
Original member Current member NCBI NM_001204883.2 NP_001191812.1 Accepted alive Link to Nucleotide Sequence:NM_001204883.2Link to Protein Sequence:NP_001191812.1Re-query CCDS DB by Nucleotide ID:NM_001204883Re-query CCDS DB by Protein ID:NP_001191812Link to BLAST:NP_001191812.1
Original member Current member NCBI NM_001204884.2 NP_001191813.1 Accepted alive Link to Nucleotide Sequence:NM_001204884.2Link to Protein Sequence:NP_001191813.1Re-query CCDS DB by Nucleotide ID:NM_001204884Re-query CCDS DB by Protein ID:NP_001191813Link to BLAST:NP_001191813.1
Original member Current member NCBI NM_001204885.1 NP_001191814.1 Accepted alive Link to Nucleotide Sequence:NM_001204885.1Link to Protein Sequence:NP_001191814.1Re-query CCDS DB by Nucleotide ID:NM_001204885Re-query CCDS DB by Protein ID:NP_001191814Link to BLAST:NP_001191814.1
Original member Current member NCBI NM_001204886.2 NP_001191815.1 Accepted alive Link to Nucleotide Sequence:NM_001204886.2Link to Protein Sequence:NP_001191815.1Re-query CCDS DB by Nucleotide ID:NM_001204886Re-query CCDS DB by Protein ID:NP_001191815Link to BLAST:NP_001191815.1
Original member Current member NCBI NM_198490.3 NP_940892.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198490.3Link to Protein Sequence:NP_940892.1Re-query CCDS DB by Nucleotide ID:NM_198490Re-query CCDS DB by Protein ID:NP_940892Link to BLAST:NP_940892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191812.1 212 Q86YS6-1 212 100% 0 0
NP_001191813.1 212 Q86YS6-1 212 100% 0 0
NP_001191814.1 212 Q86YS6-1 212 100% 0 0
NP_001191815.1 212 Q86YS6-1 212 100% 0 0
NP_940892.1 212 Q86YS6-1 212 100% 0 0

Chromosomal Locations for CCDS 33850.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129091096 129091346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129094986 129095169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129121286 129121489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCAGGGCCGGGCCCAGGCCCGGGGGACCCGGACGAGCAGTACGATTTCCTGTTCAAGCTGGTGCTGG
TGGGCGACGCAAGCGTGGGCAAGACGTGCGTGGTGCAGCGCTTCAAGACCGGCGCCTTCTCGGAGCGCCA
GGGAAGCACCATCGGCGTCGACTTCACCATGAAGACGCTGGAGATCCAGGGCAAGCGGGTCAAGCTGCAG
ATCTGGGACACGGCCGGCCAGGAGCGGTTCCGCACCATCACCCAGAGCTACTACCGCAGTGCCAATGGGG
CCATCCTTGCCTACGACATCACCAAGAGGAGCTCCTTCCTGTCGGTGCCTCACTGGATTGAGGATGTGAG
GAAGTATGCGGGCTCCAACATTGTGCAGCTGCTGATCGGGAACAAGTCAGACCTCAGCGAGCTTCGGGAG
GTCTCCTTGGCTGAGGCACAGAGCCTGGCTGAGCACTATGACATCCTGTGTGCCATTGAGACGTCTGCCA
AGGACTCGAGCAACGTGGAGGAGGCCTTCCTGAGGGTGGCCACGGAGCTCATCATGCGGCACGGGGGCCC
CTTGTTCAGCGAGAAGAGCCCCGACCACATCCAGCTGAACAGCAAGGACATCGGAGAAGGCTGGGGCTGC
GGGTGCTGA

Translation (212 aa):
MAGPGPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ
IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELRE
VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSPDHIQLNSKDIGEGWGC
GC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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