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Report for CCDS43486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43486.1 Public Homo sapiens 6 ORC3 24 110 108 CCDS HistoryNCBI Gene:23595Re-query CCDS DB by CCDS ID:43486.1Re-query CCDS DB by GeneID:23595See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43486.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392844.8 ENSP00000376586.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392844.8Link to Ensembl Protein Viewer:ENSP00000376586.3Re-query CCDS DB by Nucleotide ID:ENST00000392844Re-query CCDS DB by Protein ID:ENSP00000376586
Original member Current member NCBI NM_012381.4 NP_036513.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012381.4Link to Protein Sequence:NP_036513.2Re-query CCDS DB by Nucleotide ID:NM_012381Re-query CCDS DB by Protein ID:NP_036513Link to BLAST:NP_036513.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036513.2 711 Q9UBD5-1 711 100% 0 0

Chromosomal Locations for CCDS 43486.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87590169 87590192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87594353 87594407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87601784 87601881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87603384 87603528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87605917 87606021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87607673 87607824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87609096 87609229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87612089 87612248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87616314 87616427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87621354 87621487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87621950 87622013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87634845 87634961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87636407 87636486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87653116 87653249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87656906 87656982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87657921 87658018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87663003 87663144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87664743 87664859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87665754 87665833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87667018 87667123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGCTACGTCCTCGATGTCTAAGGGTTGCTTTGTTTTTAAGCCAAACTCCAAAAAGAGAAAGATCTCTC
TGCCAATAGAGGACTATTTTAACAAAGGGAAAAATGAGCCTGAGGACAGTAAGCTTCGATTCGAAACTTA
TCAGTTGATATGGCAGCAGATGAAATCTGAAAATGAGCGACTACAAGAGGAATTAAATAAAAACTTGTTT
GACAATCTGATTGAATTTCTGCAAAAATCACATTCTGGATTCCAGAAGAATTCAAGAGACTTGGGCGGTC
AAATAAAACTCAGAGAAATTCCAACTGCTGCTCTTGTTCTTGGTGTGAATGTCACAGATCATGATTTGAC
ATTCGGAAGTCTAACAGAGGCCCTTCAGAATAATGTCACACCATATGTAGTCTCATTGCAAGCTAAAGAT
TGTCCAGATATGAAACATTTTTTGCAAAAGTTGATCTCACAGTTGATGGACTGCTGTGTAGATATAAAAT
CCAAAGAGGAGGAAAGTGTTCACGTCACCCAAAGAAAGACACATTATTCAATGGATTCACTTTCCAGTTG
GTATATGACTGTCACACAGAAGACGGACCCAAAAATGCTAAGCAAAAAAAGGACTACTTCTAGCCAATGG
CAGTCTCCTCCTGTTGTCGTTATCTTGAAGGATATGGAAAGCTTTGCCACAAAAGTACTACAAGACTTCA
TAATTATCAGCAGTCAACATCTCCATGAATTTCCACTAATACTCATTTTTGGAATAGCCACATCTCCTAT
TATCATCCACCGATTGCTTCCTCATGCAGTATCATCTCTATTGTGCATAGAACTGTTCCAATCTTTGTCT
TGTAAGGAGCACCTGACTACGGTACTCGATAAGCTACTTCTTACAACTCAGTTTCCCTTTAAAATAAATG
AAAAAGTATTACAGGTTCTGACCAACATCTTTTTGTATCATGATTTCTCAGTTCAAAACTTTATAAAAGG
ACTTCAGCTTTCTCTATTAGAGCATTTCTATTCCCAGCCCTTAAGTGTCCTGTGCTGTAATCTTCCAGAA
GCCAAAAGAAGAATAAATTTTTTATCAAATAATCAATGTGAAAACATCCGACGTCTACCATCTTTTAGGA
GGTACGTGGAAAAGCAAGCTTCAGAAAAGCAAGTTGCGCTCTTGACCAATGAGAGATATTTGAAGGAGGA
AACACAATTATTACTAGAAAACCTGCATGTTTATCATATGAATTACTTCCTGGTTTTGAGATGTCTTCAT
AAGTTCACCTCTTCTCTTCCCAAGTATCCACTAGGTCGACAGATCAGAGAGTTGTACTGTACATGTTTAG
AAAAGAACATATGGGATTCAGAGGAGTATGCATCAGTCTTGCAGCTGCTGAGGATGTTGGCAAAGGATGA
ACTGATGACCATACTTGAGAAATGTTTCAAGGTTTTTAAGTCTTATTGTGAAAACCACCTTGGCAGCACA
GCTAAGAGAATAGAGGAGTTCCTGGCCCAGTTTCAGAGCCTCGATGAAACCAAAGAGGAAGAAGATGCTT
CTGGGTCACAGCCAAAGGGGCTTCAGAAGACAGACCTCTATCATCTTCAGAAGTCCTTATTGGAAATGAA
GGAGTTAAGAAGAAGTAAGAAGCAAACCAAATTTGAAGTACTCAGAGAAAATGTTGTGAACTTCATTGAC
TGTCTAGTGAGAGAATACCTTCTGCCTCCTGAGACACAGCCTCTCCATGAGGTGGTGTACTTCAGTGCTG
CCCATGCCCTTCGTGAGCATTTAAATGCTGCTCCGCGAATTGCCCTCCATACTGCACTCAACAATCCTTA
CTATTATCTCAAGAATGAAGCACTGAAAAGCGAAGAAGGCTGCATTCCGAATATCGCCCCAGACATCTGC
ATAGCATACAAACTGCACCTAGAGTGTAGCAGGCTCATCAACCTCGTGGACTGGTCAGAGGCTTTTGCAA
CAGTTGTGACAGCTGCTGAAAAAATGGATGCAAATTCTGCAACCTCAGAAGAAATGAATGAAATTATCCA
TGCTCGGTTTATTAGAGCTGTTTCTGAACTAGAACTTTTAGGATTTATAAAACCTACCAAACAGAAGACT
GACCATGTGGCAAGACTAACATGGGGAGGCTGCTAG

Translation (711 aa):
MATSSMSKGCFVFKPNSKKRKISLPIEDYFNKGKNEPEDSKLRFETYQLIWQQMKSENERLQEELNKNLF
DNLIEFLQKSHSGFQKNSRDLGGQIKLREIPTAALVLGVNVTDHDLTFGSLTEALQNNVTPYVVSLQAKD
CPDMKHFLQKLISQLMDCCVDIKSKEEESVHVTQRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQW
QSPPVVVILKDMESFATKVLQDFIIISSQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLS
CKEHLTTVLDKLLLTTQFPFKINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPE
AKRRINFLSNNQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYFLVLRCLH
KFTSSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILEKCFKVFKSYCENHLGST
AKRIEEFLAQFQSLDETKEEEDASGSQPKGLQKTDLYHLQKSLLEMKELRRSKKQTKFEVLRENVVNFID
CLVREYLLPPETQPLHEVVYFSAAHALREHLNAAPRIALHTALNNPYYYLKNEALKSEEGCIPNIAPDIC
IAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKT
DHVARLTWGGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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