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Report for CCDS57018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57018.1 Public Mus musculus 16 Clec16a 23 108 98 CCDS HistoryNCBI Gene:74374Re-query CCDS DB by CCDS ID:57018.1Re-query CCDS DB by GeneID:74374See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000155633.7 ENSMUSP00000123189.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155633.7Link to Ensembl Protein Viewer:ENSMUSP00000123189.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155633Re-query CCDS DB by Protein ID:ENSMUSP00000123189
Original member Current member NCBI NM_001204229.1 NP_001191158.1 Accepted alive Link to Nucleotide Sequence:NM_001204229.1Link to Protein Sequence:NP_001191158.1Re-query CCDS DB by Nucleotide ID:NM_001204229Re-query CCDS DB by Protein ID:NP_001191158Link to BLAST:NP_001191158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191158.1 1034 Q80U30-2 1034 100% 0 0

Chromosomal Locations for CCDS 57018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10545563 10545642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10560021 10560149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10563137 10563270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10568382 10568530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10571494 10571599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10573300 10573423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10576502 10576676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10577888 10577941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10580929 10581042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10595802 10595985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10611003 10611135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10614500 10614600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10627379 10627501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10630045 10630154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10630757 10630801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10635246 10635296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10638787 10638915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10644761 10644881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10688480 10688631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10691386 10691590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10694620 10694790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10731661 10731819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10741614 10741969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3105 nt):
ATGTTTGGACGCTCACGGAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGG
ACCACCTGAAGTACCTGTACCATGTTTTAACAAAAAACACCACTGTCACAGAACAAAATCGGAACCTGCT
CGTGGAGACCATCCGTTCCATCACTGAGATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTGTTTGAC
TTCTTCCTGGAGAAGAATATGTTTGTTTTCTTCTTGAACATTCTGCGGCAGAAATCAGGCCGTTATGTGT
GTGTGCAGCTGCTACAGACCTTGAACATTCTCTTTGAGAACATCAGCCACGAGACATCGCTCTATTATTT
GCTGTCTAATAACTATGTAAACTCGATCATTGTCCATAAATTTGACTTTTCCGACGAGGAGATCATGGCG
TATTACATATCGTTCCTGAAAACGCTTTCATTAAAGCTCAACAACCACACTGTCCATTTCTTTTACAATG
AGCACACCAATGACTTTGCCCTGTACACAGAAGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGTTCG
AATTGCCGTGAGAACCATCACTTTGAATGTCTACAAAGTGGATAACCAGGCCATGCTGCACTACATCAGA
GACAAAACCGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGACA
ACTGTGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAAACTGAGTGACCTGGTGGCTGAGCACTTGGA
CCACCTGCACTATCTCAACGACATCCTGATCATCAACTGCGAGTTCCTCAATGACGTACTCACCGACCAC
CTGCTCAACAGGCTTTTCCTGCCGCTCTACGTGTACTCCCTGGAGAACCCCGACAAGGGAGGAGAACGGC
CAAAAATCAGCCTGCCTGTGTCCCTCTATCTTCTCTCCCAGGTCTTCCTCATTATACATCACGCCCCGCT
GGTGAACTCTCTGGCTGAAGTCATTCTGAATGGTGATCTATCTGAGACATACACAAAGCCTGCACAGGAT
GTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGTGCTTCATTAAGCCCACTGAGACACTCGAGCGGTCCC
TTGAGATGAACAAGCACAAGGGCAAGAAGCGGATGCAAAAGAGACCCAACTACAAAAACGTTGGGGAGGA
GGAGGACGAGGAGAGAGGGTCTGCTGAAGATGCCCAGGAAGACGCTGAGAAGACTAAAGAGATTGAGATG
GTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCA
CAGACGAGGAGAAGAGCGCCGCCACGAACTCAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATATGGT
GTACCATGCCCTGGACAGCCCTGACGATGACTATCACGCCCTCTTCGTGCTCTGCCTCCTGTATGCCATG
TCTCATAACAAAGGCATGGATCCTGAAAAACTAAAACGAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGA
AAACCACCTACAACCATCTGCTGGCCGAGAGGCTCATCAGGATCATGAACAATGCTGCTCAGCCAGATGG
CAGGATCCGGTTGGCTACACTGGAGCTGAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCTGGC
TGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTCCACCTTGTACGTC
ATTTCTATAAGGGAGAAGAGATTTTCTTGGACATGTTTGAAGATGAGTACAGGAGCATGACAATAAAGCC
CATGAATGTGGAGTATCTCATGATGGATGCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGACTGGC
ATTGACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAGAAGACGAGGCGGGCCATCCGGGTATTCTTCA
TGCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAGGA
CCTGATCAAAACAGATGATGTCTTGGATCTGAATAACAGTGACTTGATTGCATGCACAGTCATCACCAAG
GATGGTGGTATGGTCCAGCGGTTCCTGGCTGTGGACATTTACCAGATGAGCCTGGTGGAGCCTGACGTAT
CCAGACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGAGGA
TGACAGCCGTGCCCTGAACATCACCATTCACAAGCCTGCCTCCAGCCCGCACTCTAAGCCCTTCCCTATC
CTGCAGGCCACCTTCGTGTTCTCGGATCATATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGGCC
GCATCCAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGCCGACAAC
AGAAGTCCTGGGATTTGGACTCTGCTCCTCCTCCTCCTCCTCCCAGCACCTGCCTTTCCGTTTCTATGAG
CAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAG
GCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATCACCGTCGCCACCATTTGC
CAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCTGCACCCTCA
GCAACCCAGAGCCCGGCAGATGCCCCCACGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGA
TTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCTGAGGGGGAGAC
AATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCT
GACACACTGAGTGTCGAGTCACTGACCATTGTCCCCCCGGTCGATCCCCACAGCCTCCGAGCCCTCTCTG
GCATCTCCCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCTGTAAACCCAGA
GCCTGCGGAACCCACAGAGCACTGA

Translation (1034 aa):
MFGRSRSWVGGGHSKSSRNIHSLDHLKYLYHVLTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFD
FFLEKNMFVFFLNILRQKSGRYVCVQLLQTLNILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMA
YYISFLKTLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLHYIR
DKTAVPYFSNLVWFIGSHVIELDNCVQTDEEHRNRGKLSDLVAEHLDHLHYLNDILIINCEFLNDVLTDH
LLNRLFLPLYVYSLENPDKGGERPKISLPVSLYLLSQVFLIIHHAPLVNSLAEVILNGDLSETYTKPAQD
VPRSSAKPSIRCFIKPTETLERSLEMNKHKGKKRMQKRPNYKNVGEEEDEERGSAEDAQEDAEKTKEIEM
VIMKLGKLSEVAAAGTSVQEQNTTDEEKSAATNSENAQWSRPFLDMVYHALDSPDDDYHALFVLCLLYAM
SHNKGMDPEKLKRIQLPVPSEAEKTTYNHLLAERLIRIMNNAAQPDGRIRLATLELSCLLLKQQVLTSSG
CVIKDVHLACLEGAREESVHLVRHFYKGEEIFLDMFEDEYRSMTIKPMNVEYLMMDASILLPPTGTPLTG
IDFVKRLPCGDVEKTRRAIRVFFMLRSLSLQLRGEPETQLPLTREEDLIKTDDVLDLNNSDLIACTVITK
DGGMVQRFLAVDIYQMSLVEPDVSRLGWGVVKFAGLLQDMQVTGVEDDSRALNITIHKPASSPHSKPFPI
LQATFVFSDHIRCIIAKQRLAKGRIQARRMKMQRIAALLDLPIQPTTEVLGFGLCSSSSSSQHLPFRFYE
QCRRGSSDPTVQRSVFASVDKVPGFAVAQCINQHSSPSLSSPSPPFASGSPGGSGSTSHCDSGGSSSAPS
ATQSPADAPTTPEQPQPHLDQSVIGNEMDVNSKPSKNSSARSSEGETMHLSPSLLPAQQPTISLLYEDTA
DTLSVESLTIVPPVDPHSLRALSGISQLPTLPAADTETPAEGAVNPEPAEPTEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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