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Report for CCDS38995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38995.1 Public Mus musculus 4 Slc35e2 23 108 98 CCDS HistoryNCBI Gene:320541Re-query CCDS DB by CCDS ID:38995.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043829.10 ENSMUSP00000041449.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043829.10Link to Ensembl Protein Viewer:ENSMUSP00000041449.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043829Re-query CCDS DB by Protein ID:ENSMUSP00000041449
Original member Current member EBI ENSMUST00000105608.8 ENSMUSP00000101233.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105608.8Link to Ensembl Protein Viewer:ENSMUSP00000101233.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105608Re-query CCDS DB by Protein ID:ENSMUSP00000101233
Original member Current member EBI ENSMUST00000118607.1 ENSMUSP00000113189.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118607.1Link to Ensembl Protein Viewer:ENSMUSP00000113189.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118607Re-query CCDS DB by Protein ID:ENSMUSP00000113189
Original member Current member NCBI NM_177186.4 NP_796160.1 Accepted alive Link to Nucleotide Sequence:NM_177186.4Link to Protein Sequence:NP_796160.1Re-query CCDS DB by Nucleotide ID:NM_177186Re-query CCDS DB by Protein ID:NP_796160Link to BLAST:NP_796160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796160.1 405 Q8C811 405 100% 0 0

Chromosomal Locations for CCDS 38995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155609998 155610319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155610501 155610636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155611616 155611743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155612617 155612737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155615569 155615622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155616183 155616255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155617615 155617760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155618512 155618749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGTCAGCAGCAGCGAAATCCCAAGTGCCGGAGGAGGCAGCGCCTGGCTGCGAGGAAGAGCCCAAGGGAA
AAACACTTCTCACTTGGGGGTCTCTATTTGGTCACCGAAGTGAGAAGATTGTCTTTACCAAAGGTGATGG
CAGCCCAGAGGAGAGCTTGCTCACTGTCACCATCACAGAGACCACTGTCATTGAGTCGGATCTGGGTGTG
TGGAGTTCAAGGGCTCTCATCTACCTCACACTGTGGTTCTTCTTCAGCTTCTGTACACTGTTCCTCAACA
AATACATCCTGTCCCTGTTAGAGGGAGAGCCCAGCATGTTAGGTGCTGTGCAGATGCTGTCAACAACGTT
AATTGGATGTGTTAAAATATTTGTTCCTTGCTGTTTATATCAACACAAAACCCGGCTTTCTTACCCACCC
AATTTCATCATGACTATGCTCTTTGTGGGCCTCATGAGGTTTGCAACGGTGGTTTTGGGGCTGGTCAGCC
TCAAGAATGTGGCAGTGTCCTTTGCTGAGACAGTGAAGAGCTCGGCTCCCATTTTCACGGTGATCATGTC
TCGGATGATTCTGGGGGAGTACACAGGGCTGCTGGTCAACCTGTCCCTCATTCCAGTCATGGGAGGACTA
GCGTTGTGCACTGCCACGGAAATAAGCTTCAACATCCTGGGGTTTTCAGCTGCGTTATCCACCAACATTA
TGGATTGTTTGCAGAATGTTTTTTCAAAAAAGCTTCTCAGTGGGGACAAATACCGGTTCTCGGCCCCGGA
ACTGCAGTTCTACACCAGTGCTGCTGCTGTGGCCTTGCTCATTCCAGCATGGACCTTCTTCATGGATATC
CCTGTGATTGGAAGGAGTGGGAAGAGCTTCAGCTACAGCCAGGACATCGTGCTGTTGCTGCTGACAGATG
GCGCCTTGTTTCACCTTCAGAGTGTCACTGCATATGCCCTGATGGGAAAGATCTCCCCTGTGACGTTCAG
TGTCGCCAGTACTGTGAAGCACGCCTTGTCTATCTGGCTCAGCATCATCGTTTTTGGAAACAAAATCACT
AGCCTGTCTGCCATTGGCACCATCCTTGTCACATTGGGTGTCTTGCTCTACAACAAGGCCAGGCAGTATC
AGCAGGAGACTATGCAGAGTCTGGTCACAGCCACCAGCCGAAACCCAGAAGATGACACAGAGCCCCTTGT
TCCCCAGGACTCTAGACAGCACCACTGA

Translation (405 aa):
MSAAAKSQVPEEAAPGCEEEPKGKTLLTWGSLFGHRSEKIVFTKGDGSPEESLLTVTITETTVIESDLGV
WSSRALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCCLYQHKTRLSYPP
NFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGL
ALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVALLIPAWTFFMDI
PVIGRSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSIIVFGNKIT
SLSAIGTILVTLGVLLYNKARQYQQETMQSLVTATSRNPEDDTEPLVPQDSRQHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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