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Report for CCDS50144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50144.1 Public Mus musculus 17 Kif6 23 108 98 CCDS HistoryNCBI Gene:319991Re-query CCDS DB by CCDS ID:50144.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50144.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162854.1 ENSMUSP00000124674.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162854.1Link to Ensembl Protein Viewer:ENSMUSP00000124674.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162854Re-query CCDS DB by Protein ID:ENSMUSP00000124674
Original member NCBI NM_177052.3 NP_796026.2 Updated not alive Link to Nucleotide Sequence:NM_177052.3Link to Protein Sequence:NP_796026.2Re-query CCDS DB by Nucleotide ID:NM_177052Re-query CCDS DB by Protein ID:NP_796026
Current member NCBI NM_177052.4 NP_796026.2 Accepted alive Link to Nucleotide Sequence:NM_177052.4Link to Protein Sequence:NP_796026.2Re-query CCDS DB by Nucleotide ID:NM_177052Re-query CCDS DB by Protein ID:NP_796026Link to BLAST:NP_796026.2

Chromosomal Locations for CCDS 50144.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49615237 49615302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49620593 49620702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49624452 49624526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49671033 49671180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49675277 49675386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49686391 49686520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49707510 49707716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49713995 49714138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49715064 49715150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49722241 49722344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49753822 49753927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49755101 49755236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49758422 49758637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49832141 49832249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49839152 49839207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49870894 49870944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49890004 49890088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49891690 49891825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49895800 49895882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49901252 49901299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49901761 49901850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49903576 49903670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49908777 49908793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGTGAAGCAGACGATCCAGATTTTCGCTAGGGTGAAGCCCACCGTGCGGAAGCAGCAGCAAGGGATTT
ACTCCATAGATGAAGATGAAAAATTAACGCATAGCTTGGAAATTGTCTTACCCCGAGACCTGGCAGATGG
ATTCGTAAACAACAAACGAGAAAGCTACAAGTTTAAGTTTCAAAGGATTTTTGACCAAGAGGCTAAGCAA
GAGATCATTTTCGAGATCATTGCCAAACCAGTCGCCGAGAGTACCTTGGCAGGTTACAATGGCACCATCT
TCGCATATGGGCAGACGGGCAGTGGCAAGACATTCACCATCACAGGCGGGGCAGAGCGCTACAGTGACAG
AGGCATCATCCCAAGGACCCTGTCGTACATTTTTGAGCAGTTGCAAAAGGACAGCAGCAAGATCTACACG
ACACACATTTCTTACTTGGAAATCTACAACGAATGTGGCTATGACCTGCTGGATCCCAGACACGAAGCCT
CCAAACTGGAAGATCTGCCGAAAGTGACAATATTGGAGGACCCTGATCAGAACATTCACCTGAAAAACCT
GTCTCTGCATCAGGCAACAACTGAGGAGGAAGCTCTGAACCTGCTCTTCTTGGGGGACACCAACAGGATG
ATCGCTGAGACTCCTATGAATCAAGCTTCAACCCGGTCACACTGTATTTTCACTGTGCACTTGAGCAGCA
AGGAGCCAGGTTCTGCCACCGTCCGACATGCTAAGCTCCATCTGGTTGACCTGGCAGGGTCAGAGCGTGT
CTCGAAGACTGGAGTCGGGGGCCTGCTTCTGACAGAGGCCAAATACATCAACTTGTCCCTACACTACCTG
GAGCAGGTCATCATTGCCCTTTCGGAAAAACACCGTACACACATCCCTTACAGGAACTCCATGATGACCA
GCGTGCTCAGAGACAGTCTGGGAGGGAACTGCATGACCACCATGATTGCAACCCTGTCTTTGGAGAAGAG
GAACATTGATGAGTCTATCTCCACCTGCAGATTTGCTCAGCGAGTGGCCCTAATTAAAAACGAAGCCATT
CTCAACGAAGAGATTGATCCCAGGCTGATGATTGTTCGCTTGCAAAAGGAGATTGAAGACTTGAAGGCAG
AGTTGGCCATGGCCACAGGAGAGCAGAGGACAGAGGCCCTCACGGAAGCAGAGCTCCTTCAGTTGGAAAA
ACTAATAGCATCCTATTTGGAAGACCAAGATCCAGAGAGTCGACTGGAAGTTGGCGCTGATATGCGTAAA
ATCCATCACTGTTTTCATCATTTTAAGAAGCTGTTGAATGACAAGAAGACCCTAGAGAATACTGTCTCCT
CTGAAAGCACACGGCAAGCATGCCAAGAACCATTGAGAGATGAAGAATATACAAAGCTCCTAGGTCTTCT
CAAGCAGAGGGACAACGAGATCAATATCCTGGTCAATATGTTAAAAAAGGAAAAGAAGAAAACTCAGGAT
GCCCTCCAGAATTCAAGCCTAGAGAAAAGCGATACCAGGCCACCTCAGAACTCGCCCTTCATCGCTGGGA
GCCCAGCGGTCCCAAGGACCCCATTCTCCTCAGCCCCGAGCCACACCCAGGACCTCAGCATCTGCAGGCA
CAGATCCAGCTTGCTCCACAAAAAAACAGGGATGAGAGAGGAGATGTCACTGGGACGCCAGGAGGCTTTT
GAGATTTTCAAGAGGGACCACGCTGACAGTGTCACCATCGAGGACAACAAACAGGTTCTGAAGCAGAGAT
TTTCTGAAGCAAAAGCTCTGGGAGAAAGTATAAATGAAGCAAGAAGTAAAATTGGTCAGCTGAAAGATGC
CATCAACCAGCGGCACCTACAGCAAGTAGCTCTTGGAATCTCAGAGAACACTGTCCCAGCCTCCACGCCT
GACCCCCAGGAGGAGAAACTGCGAGCACAGCTGGAGGAGGAGAAGGGCAGGTACAAAACGGCCTTTATGC
ACCTGAAGGCCCTGAAGGTGGAGATAGAGCACCTGCAGCTGCTCATGGACAAAGCCAAGGTCAAGCTGCA
GAAAGAGTTCGAGGCCTGGTGGGCAGAGGAGGCCACCAGCCTGCAGGTAAACTCCCCGGCCACGAACCTC
CAGGATGCTGTGAAGCCGTTTCCCCAGCAGGACCAGGCACAGCTTCTCTCCAAGAAAAGTTCTCGAGACT
TGGAAGTTGAAAATGGAGCTGGCAGGCTGGAGGTCTGCGATAGGAATGCCAGAAGAATCCTTCCCTCCCC
CTGCCCCAACCAGCAAAGCCAAGAGCCCAGTGGCTCCAGGGTCCTGGTGCAAGATAGGCCCCTATCATCC
ATCCCTCTCACTGGAGACAGCCAGACAGACTCCGACATCCTAGCATTCATCAAGGCCAGACAGAGCATTC
TACAGAAGAAATGCCTGGGAAGCAACTGA

Translation (802 aa):
MVKQTIQIFARVKPTVRKQQQGIYSIDEDEKLTHSLEIVLPRDLADGFVNNKRESYKFKFQRIFDQEAKQ
EIIFEIIAKPVAESTLAGYNGTIFAYGQTGSGKTFTITGGAERYSDRGIIPRTLSYIFEQLQKDSSKIYT
THISYLEIYNECGYDLLDPRHEASKLEDLPKVTILEDPDQNIHLKNLSLHQATTEEEALNLLFLGDTNRM
IAETPMNQASTRSHCIFTVHLSSKEPGSATVRHAKLHLVDLAGSERVSKTGVGGLLLTEAKYINLSLHYL
EQVIIALSEKHRTHIPYRNSMMTSVLRDSLGGNCMTTMIATLSLEKRNIDESISTCRFAQRVALIKNEAI
LNEEIDPRLMIVRLQKEIEDLKAELAMATGEQRTEALTEAELLQLEKLIASYLEDQDPESRLEVGADMRK
IHHCFHHFKKLLNDKKTLENTVSSESTRQACQEPLRDEEYTKLLGLLKQRDNEINILVNMLKKEKKKTQD
ALQNSSLEKSDTRPPQNSPFIAGSPAVPRTPFSSAPSHTQDLSICRHRSSLLHKKTGMREEMSLGRQEAF
EIFKRDHADSVTIEDNKQVLKQRFSEAKALGESINEARSKIGQLKDAINQRHLQQVALGISENTVPASTP
DPQEEKLRAQLEEEKGRYKTAFMHLKALKVEIEHLQLLMDKAKVKLQKEFEAWWAEEATSLQVNSPATNL
QDAVKPFPQQDQAQLLSKKSSRDLEVENGAGRLEVCDRNARRILPSPCPNQQSQEPSGSRVLVQDRPLSS
IPLTGDSQTDSDILAFIKARQSILQKKCLGSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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