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Report for CCDS28480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28480.1 Public Mus musculus 17 Eci1 23 108 98 CCDS HistoryNCBI Gene:13177Re-query CCDS DB by CCDS ID:28480.1Re-query CCDS DB by GeneID:13177See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234304.1 ENSMUSP00000157291.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234304.1Link to Ensembl Protein Viewer:ENSMUSP00000157291.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234304Re-query CCDS DB by Protein ID:ENSMUSP00000157291
Original member Current member NCBI NM_010023.4 NP_034153.2 Accepted alive Link to Nucleotide Sequence:NM_010023.4Link to Protein Sequence:NP_034153.2Re-query CCDS DB by Nucleotide ID:NM_010023Re-query CCDS DB by Protein ID:NP_034153Link to BLAST:NP_034153.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034153.2 289 P42125 289 100% 0 0

Chromosomal Locations for CCDS 28480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24426703 24426742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24426853 24426939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24433133 24433260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24436178 24436324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24437220 24437341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24437432 24437610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24438949 24439115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGCGCTGGCTGCTGCGCGTCGCCTTCTGCTGCACGCGGGATCCCGCCTCGGGCGCAGGGAAGCGGTGG
ACGGCGCGCGGCGCTTCGCTAACAAGCGGGTGCTGGTGGAGACGGAGGGCCCGGCAGGGGTTGCAGTGAT
GAAGTTAAGGAACCCTCCCGTGAATTCCCTCAGCTTGGAGTGTCTCACAGAGTTCACCATCAGCCTGGAG
AAGCTGGAAAATGACAAGAGCATCCGAGGTGTCATCCTCACGTCGGAATGCCCGGGTATCTTCTCAGCTG
GCCTGGACTTGCTGGAGATGTATGGCCGGAACCCAGCCCACTATGCTGAGTACTGGAAGAACGTGCAGGA
GCTGTGGCTGAGACTCTACACGTCCAACATGATCTTAGTGTCTGCCATCAATGGAGCCTCTCCAGCTGGA
GGGTGCCTCTTGGCTCTCTGCTGTGACTACAGGGTTATGGCTGACAACCCCAAATATACTATAGGATTGA
ATGAGAGCCTGCTGGGCATTGTTGCCCCCTTCTGGTTTAAAGACATGTATGTGAACACCATCGGGCACCG
GGAGGCGGAGCGTGCCCTTCAGCTGGGGACCCTTTTCTCACCAGCAGAGGCCCTCAAGGTGGGAGTGGTG
GATGAGGTGGTACCTGAGGATCAGGTACACAGCAAGGCTCGCTCAGTGATGACCAAGTGGTTAGCTATCC
CAGACCATTCTCGGCAGCTGACAAAGAACATGATGCGAAAGGCCACCGCAGACAACCTGATCAAGCAGCG
AGAGGCTGACATCCAGAATTTCACCAGTTTCATCTCCAAAGACTCCATCCAGAAGTCCCTACACATGTAC
TTGGAAAAGCTCAAGCAAAAGAAGGGCTAA

Translation (289 aa):
MALAAARRLLLHAGSRLGRREAVDGARRFANKRVLVETEGPAGVAVMKLRNPPVNSLSLECLTEFTISLE
KLENDKSIRGVILTSECPGIFSAGLDLLEMYGRNPAHYAEYWKNVQELWLRLYTSNMILVSAINGASPAG
GCLLALCCDYRVMADNPKYTIGLNESLLGIVAPFWFKDMYVNTIGHREAERALQLGTLFSPAEALKVGVV
DEVVPEDQVHSKARSVMTKWLAIPDHSRQLTKNMMRKATADNLIKQREADIQNFTSFISKDSIQKSLHMY
LEKLKQKKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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