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Report for CCDS29454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29454.1 Public Mus musculus 19 Sf3b2 23 108 98 CCDS HistoryNCBI Gene:319322Re-query CCDS DB by CCDS ID:29454.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025774.10 ENSMUSP00000025774.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025774.10Link to Ensembl Protein Viewer:ENSMUSP00000025774.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000025774Re-query CCDS DB by Protein ID:ENSMUSP00000025774
Original member Current member NCBI NM_030109.2 NP_084385.2 Accepted alive Link to Nucleotide Sequence:NM_030109.2Link to Protein Sequence:NP_084385.2Re-query CCDS DB by Nucleotide ID:NM_030109Re-query CCDS DB by Protein ID:NP_084385Link to BLAST:NP_084385.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084385.2 878 Q3UJB0 878 100% 0 0

Chromosomal Locations for CCDS 29454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5274456 5274527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5274792 5274977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5275064 5275163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5279269 5279370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5279470 5279612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5279842 5279949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5283643 5283750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5283858 5283947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5284575 5284724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5286189 5286416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5286577 5286657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5286811 5286948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5287069 5287284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5287535 5287626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5287910 5288006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5288304 5288413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5291305 5291422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5293080 5293319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5294299 5294376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5295041 5295087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5295262 5295394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2637 nt):
ATGGCGGCGGAGCATCCCGAACCTCCCAAAGGAGAGTTGCAGTTGCCACCGCCTCCACCTCCAGGCCACT
ATGGAGCCTGGGCTGCGCAGGAGCTTCAGGCCAGATTGGCAGAGATAGGAGCGCCGATCCAGGGGAGTCG
CGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAGACGGGCATTGTCCTGAATCGACCAGTTTTG
AGAGGAGAAGATGGGGACAAAGCGGCTCCTCCTCCTATGTCAGCACAGCTGTCTGGGATTCCTATGCCAC
CACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCT
TGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCG
CTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTG
CCAAGCAGGCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCC
TCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCGTAGCTGCTCCAGTA
GGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCC
CACCCCCTGGAGATGAGAACAGAGAGATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGA
AAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGGAGGAGGAGGAAATGGAG
ACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAA
AAGAGAAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATC
AGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTG
GAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTG
AGGCTTTCAAGCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGA
GAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGAT
GATGAGCAGGAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTA
CTGTGGCAGAACTCAAGCAGCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGA
CCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAG
CGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCA
CAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAGGAAGAACAAAAAACCATGAAGTCAAAAATGAG
AGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAG
TGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAGGGGAAGGAGTTTGAGACACGGC
TGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTAA
TGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAAC
CTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGG
GCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTT
TCAGACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAA
TCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTG
CAGACAGCGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCAT
TGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATGGAAGTGAGACACCTCAGTTATTCACTGTATTG
CCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACGG
TTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGA
GTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAG
GAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAGCAAAAGAAACGGAAAGCTCAGCCCC
AGGACAGCCGTGGGGGCAGCAAGAAATACAAGGAGTTCAAATTTTAG

Translation (878 aa):
MAAEHPEPPKGELQLPPPPPPGHYGAWAAQELQARLAEIGAPIQGSREELVERLQTYTRQTGIVLNRPVL
RGEDGDKAAPPPMSAQLSGIPMPPPPMGLPPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPPLRVGEPVA
LSEEERLKLAQQQAALLMQQEERAKQAAVLMEQERQQEIAKMGTAVPRPPQDMGQLGVRTPLGPRVAAPV
GPVVPTPTVLPMGAPVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEME
TDTRSSLGQSASETEEDTVSISKKEKNRKRRNRKKKKKPQRVRAASSESSGDREKDSGRSRGSDPPAADV
EIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKMESSAVPKKKGFEEEHKDSDDDSSD
DEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFK
RKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFK
WQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPN
LKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEE
SSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQLFTVL
PEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQVEK
EDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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