NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10150.1 Public Homo sapiens 15 ONECUT1 24 110 108 CCDS HistoryNCBI Gene:3175Re-query CCDS DB by CCDS ID:10150.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10150.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305901.7 ENSP00000302630.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305901.7Link to Ensembl Protein Viewer:ENSP00000302630.4Re-query CCDS DB by Nucleotide ID:ENST00000305901Re-query CCDS DB by Protein ID:ENSP00000302630
Original member Current member NCBI NM_004498.4 NP_004489.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004498.4Link to Protein Sequence:NP_004489.1Re-query CCDS DB by Nucleotide ID:NM_004498Re-query CCDS DB by Protein ID:NP_004489Link to BLAST:NP_004489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004489.1 465 Q9UBC0 465 100% 0 0

Chromosomal Locations for CCDS 10150.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 52757555 52757847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52788780 52789884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGAACGCGCAGCTGACCATGGAAGCGATCGGCGAGCTGCACGGGGTGAGCCATGAGCCGGTGCCCGCCC
CTGCCGACCTGCTGGGCGGCAGCCCCCACGCGCGCAGCTCCGTGGCGCACCGCGGCAGCCACCTGCCCCC
CGCGCACCCGCGCTCCATGGGCATGGCGTCCCTGCTGGACGGCGGCAGCGGCGGCGGAGATTACCACCAC
CACCACCGGGCCCCTGAGCACAGCCTGGCCGGCCCCCTGCATCCCACCATGACCATGGCCTGCGAGACTC
CCCCAGGTATGAGCATGCCCACCACCTACACCACCTTGACCCCTCTGCAGCCGCTGCCTCCCATCTCCAC
AGTCTCGGACAAGTTCCCCCACCATCACCACCACCACCATCACCACCACCACCCGCACCACCACCAGCGC
CTGGCGGGCAACGTGAGCGGTAGCTTCACGCTCATGCGGGATGAGCGCGGGCTGGCCTCCATGAATAACC
TCTATACCCCCTACCACAAGGACGTGGCCGGCATGGGCCAGAGCCTCTCGCCCCTCTCCAGCTCCGGTCT
GGGCAGCATCCACAACTCCCAGCAAGGGCTCCCCCACTATGCCCACCCGGGGGCCGCCATGCCCACCGAC
AAGATGCTCACCCCCAACGGCTTCGAAGCCCACCACCCGGCCATGCTCGGCCGCCACGGGGAGCAGCACC
TCACGCCCACCTCGGCCGGCATGGTGCCCATCAACGGCCTTCCTCCGCACCATCCCCACGCCCACCTGAA
CGCCCAGGGCCACGGGCAACTCCTGGGCACAGCCCGGGAGCCCAACCCTTCGGTGACCGGCGCGCAGGTC
AGCAATGGAAGTAATTCAGGGCAGATGGAAGAGATCAATACCAAAGAGGTGGCGCAGCGTATCACCACCG
AGCTCAAGCGCTACAGCATCCCACAGGCCATCTTCGCGCAGAGGGTGCTCTGCCGCTCCCAGGGGACCCT
CTCGGACCTGCTGCGCAACCCCAAACCCTGGAGCAAACTCAAATCCGGCCGGGAGACCTTCCGGAGGATG
TGGAAGTGGCTGCAGGAGCCGGAGTTCCAGCGCATGTCCGCGCTCCGCTTAGCAGCATGCAAAAGGAAAG
AACAAGAACATGGGAAGGATAGAGGCAACACACCCAAAAAGCCCAGGTTGGTCTTCACAGATGTCCAGCG
TCGAACTCTACATGCAATATTCAAGGAAAATAAGCGTCCATCCAAAGAATTGCAAATCACCATTTCCCAG
CAGCTGGGGTTGGAGCTGAGCACTGTCAGCAACTTCTTCATGAACGCAAGAAGGAGGAGTCTGGACAAGT
GGCAGGACGAGGGCAGCTCCAATTCAGGCAACTCATCTTCTTCATCAAGCACTTGTACCAAAGCATGA

Translation (465 aa):
MNAQLTMEAIGELHGVSHEPVPAPADLLGGSPHARSSVAHRGSHLPPAHPRSMGMASLLDGGSGGGDYHH
HHRAPEHSLAGPLHPTMTMACETPPGMSMPTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHHHHPHHHQR
LAGNVSGSFTLMRDERGLASMNNLYTPYHKDVAGMGQSLSPLSSSGLGSIHNSQQGLPHYAHPGAAMPTD
KMLTPNGFEAHHPAMLGRHGEQHLTPTSAGMVPINGLPPHHPHAHLNAQGHGQLLGTAREPNPSVTGAQV
SNGSNSGQMEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM
WKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQ
QLGLELSTVSNFFMNARRRSLDKWQDEGSSNSGNSSSSSSTCTKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH