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Report for CCDS39370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39370.1 Public Mus musculus 5 Daglb 23 108 98 CCDS HistoryNCBI Gene:231871Re-query CCDS DB by CCDS ID:39370.1Re-query CCDS DB by GeneID:231871See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045593.11 ENSMUSP00000043088.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045593.11Link to Ensembl Protein Viewer:ENSMUSP00000043088.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045593Re-query CCDS DB by Protein ID:ENSMUSP00000043088
Original member Current member NCBI NM_144915.3 NP_659164.2 Accepted alive Link to Nucleotide Sequence:NM_144915.3Link to Protein Sequence:NP_659164.2Re-query CCDS DB by Nucleotide ID:NM_144915Re-query CCDS DB by Protein ID:NP_659164Link to BLAST:NP_659164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659164.2 669 Q91WC9 669 100% 0 0

Chromosomal Locations for CCDS 39370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143464682 143464776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143466953 143467104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143472947 143473118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143474613 143474871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143478414 143478536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143481630 143481757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143484226 143484352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143487148 143487231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143489927 143490004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143494158 143494238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143494542 143494669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143500970 143501038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143501125 143501197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143502862 143503109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143503207 143503399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGCCGGGGATGGTGCTGTTCGGCCGGCGCTGGTCTCTAGCCAGCGACGACTTGGTGTTCCCCGGGTCTT
TTGAGCTGTTCCTGCGTGTGCTGTGGTGGATTGTCAGTCTGACGTTGTATCTCACGCACAGAAGGAGGCT
GGACTGTCCCGGTGGAGTCTTGCTCAGCACGTACCTGATAGTCCTCCTTGTTCTCCTGGCAGTTATTATA
TGCACCGTGTTGGCCATCGTGTGTGTCAGCATGAGAGGAACCATTTGTAACCCTGGACCTCGGAAGTCTA
TGTCTAAGCTGCTCTATATCCGCCTGGCGCTCTTCCTGCCAGAGATGGTCTGGGCTTCTCTGGGGGCCGC
CTGGGTGGCAAAAGGTATCCAGTGTGACAGGACAGTTGTCATTGGCATCATCGCCACCGTCATTGTCAGC
TGGATTGTCATTGCTGCCACCATGGTCACCATCATCTTTGTCTTTGACCCGCTGGGCGGGAAGATGGCTC
CGTATCCCCCATGCATCCCGGAGCACCTGGACAGTAACAGCTCAAACCGGTTACTGACTGGCCTGAAGAC
GGCTGCGAAGAGCGTGTGGGAGACCCGGGTGCAGTTCTGCTGCTGCTGCGTTGGGCAGGATGATAACACC
AGGGTGGCGTTTTCCAGCACTGCCGACCTGTTCTCCACCTACTTCTCTGACACAGACCTGGTGCCTAGTG
ATATCGCAGCAGGCTTCACCCTTCTCCACCAGCAACAAGACAATATCAGCCACAGCCGGGAGCCTCCGGA
GGTCGTGACCCACACACCAGGACAGCCTCAGGAAACTGAGTTAGATGCAGAAGTGGAGAACTGCCATCAT
TACATGCCGTTTGCAGCAGCTGCCTATGGGTGGCCGCTCTACATCTACAGGAACCCGTTCACGGGGCTGT
GCAGGATTGGTGGCGACTGTTGCAGAGCCAGAGACATAGAGTACGATGCAGTGGAAGGTGACCAGCACAA
CTGCCACTTCGCCTCCATCCTGAAGACCACAGGGCTGCAGTACAGGGATTTCATTCACATAAGCTTTCAC
GACAAGGTGTATGAGCTGCCCTTCATAGTGGTTCTGGACCACAGGAAGGAGTCTGTTGTGGTCGCCGTGA
GAGGGACCATGTCTCTCCAGGACGTCCTGACCGACCTGTCTGCCGAGAGTGAGACCCTGGAGCTGGGGAT
TGAGCTACAGGACTGTGTGGCCCACAAGGGAATTGCTCAAGCGGCCAGATACATTCACCGCAGACTGGTC
AATGATGGGATTCTGAGCCAAGCCTTCAGTGTCGCTCCGGAGTACCAGCTCGTTCTGGTGGGGCACAGCC
TAGGAGCCGGCGCTGCGGCCCTGTTAGCCATCATGCTCCGGGGGGCCTACCCACAAGTCCGTGCTTATGC
CTTCTCCCCGCCCAGGGGGCTGCTCAGCAAATCCCTTTACGAGTACTCCAAGGACTTTGTCGTGTCGCTT
ATCCTAGGGATGGATGTGATCCCCAGGTTAAGTGTGACCAACATGGAGGACCTCAAGAGGAGGATCCTGA
GAGTGATCGCTAACTGCAATAAGCCGAAGTACAAGATCTTGCTGCATGGCTGTTGGTACGGACTGTTCGG
AGGAAGCCCTGATAACTTTCCAACTGAACTGGATGAGGGCACCCAGGGGGCCCTGACTCAGCCTCTTCTT
GGAGAGCAGACACTTCTAACCCGATACTCCCCGGGCTACTGTTCCAGCGACTCCCCACTGGACTCCCCCA
CCAAGTACCCCACTCTGTACCCACCTGGCAGGATCATCCACCTGGAAGAGGAGGGTGGTTCAGGGAGGTT
TGGCTGCTGTTCTGCTGCCCAGTACAGAGCGAGGTGGGCACACGAAGCAGAATTCAGTAAGATCCTGATA
GGCCCAAAGATGCTGATTGACCACATGCCTGACGTCATGATTCGGGCCCTGGACAGAGTGCTTGCCGACA
GGACAGCCTGCGTCTCCTGCCCAGGGCAAGGCGGCTCAAGTGTACCGTAG

Translation (669 aa):
MPGMVLFGRRWSLASDDLVFPGSFELFLRVLWWIVSLTLYLTHRRRLDCPGGVLLSTYLIVLLVLLAVII
CTVLAIVCVSMRGTICNPGPRKSMSKLLYIRLALFLPEMVWASLGAAWVAKGIQCDRTVVIGIIATVIVS
WIVIAATMVTIIFVFDPLGGKMAPYPPCIPEHLDSNSSNRLLTGLKTAAKSVWETRVQFCCCCVGQDDNT
RVAFSSTADLFSTYFSDTDLVPSDIAAGFTLLHQQQDNISHSREPPEVVTHTPGQPQETELDAEVENCHH
YMPFAAAAYGWPLYIYRNPFTGLCRIGGDCCRARDIEYDAVEGDQHNCHFASILKTTGLQYRDFIHISFH
DKVYELPFIVVLDHRKESVVVAVRGTMSLQDVLTDLSAESETLELGIELQDCVAHKGIAQAARYIHRRLV
NDGILSQAFSVAPEYQLVLVGHSLGAGAAALLAIMLRGAYPQVRAYAFSPPRGLLSKSLYEYSKDFVVSL
ILGMDVIPRLSVTNMEDLKRRILRVIANCNKPKYKILLHGCWYGLFGGSPDNFPTELDEGTQGALTQPLL
GEQTLLTRYSPGYCSSDSPLDSPTKYPTLYPPGRIIHLEEEGGSGRFGCCSAAQYRARWAHEAEFSKILI
GPKMLIDHMPDVMIRALDRVLADRTACVSCPGQGGSSVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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