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Report for CCDS22618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22618.1 Public Mus musculus 8 Nrn1l 23 108 98 CCDS HistoryNCBI Gene:234700Re-query CCDS DB by CCDS ID:22618.1Re-query CCDS DB by GeneID:234700See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060167.5 ENSMUSP00000056940.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060167.5Link to Ensembl Protein Viewer:ENSMUSP00000056940.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060167Re-query CCDS DB by Protein ID:ENSMUSP00000056940
Original member Current member NCBI NM_175024.4 NP_778189.1 Accepted alive Link to Nucleotide Sequence:NM_175024.4Link to Protein Sequence:NP_778189.1Re-query CCDS DB by Nucleotide ID:NM_175024Re-query CCDS DB by Protein ID:NP_778189Link to BLAST:NP_778189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778189.1 162 Q8C4W3-1 162 100% 0 0

Chromosomal Locations for CCDS 22618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105893580 105893667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105894366 105894480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105894623 105894908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGATGTGCAACTGCTGCCACTGCCACTGGCGCCGCCGCTGTCAGCGGCTACCCTGTGCCCTGACGCTGT
TGCTGCTACTACCACTCGCAGTGGCCTCTGAGGGCCCAAACCGCTGTGATACCATATACCAAGGCTTTGC
TGAATGTCTCATCCGCCTGGGGGATGGCATGGGTCGAGGAGGCGAGCTACAGACTGTCTGCAGATCCTGG
AATGACTTCCACGCCTGTGCCTCTCGGGTCCTGTCAGGCTGCCCAGAGGAGGCGGCTGCAGTGTGGGAGT
CACTGCAGCAAGAAGCTCGCCGCGCCCCACACCCAGATAATTTGCACATCCTCTGTGGCGCTCCTGTGAG
TGTTCGGGAGCGGATTGCTGGCCCAGAGACCAACCAGGAGACACTACGGGCCACAGCTCCTGCACTGGCT
CCAGCTCCAGCCCCTGTGTTGCTCGCCGCCGCTCTAGCGCTTGCCTGCCTCCTGGGGCCTCTGGCCTAA

Translation (162 aa):
MMCNCCHCHWRRRCQRLPCALTLLLLLPLAVASEGPNRCDTIYQGFAECLIRLGDGMGRGGELQTVCRSW
NDFHACASRVLSGCPEEAAAVWESLQQEARRAPHPDNLHILCGAPVSVRERIAGPETNQETLRATAPALA
PAPAPVLLAAALALACLLGPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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