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Report for CCDS12124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12124.1 Public Homo sapiens 19 YJU2 24 110 108 CCDS HistoryNCBI Gene:55702Re-query CCDS DB by CCDS ID:12124.1Re-query CCDS DB by GeneID:55702See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262962.12 ENSP00000262962.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262962.12Link to Ensembl Protein Viewer:ENSP00000262962.6Re-query CCDS DB by Nucleotide ID:ENST00000262962Re-query CCDS DB by Protein ID:ENSP00000262962
Original member Current member NCBI NM_018074.6 NP_060544.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018074.6Link to Protein Sequence:NP_060544.2Re-query CCDS DB by Nucleotide ID:NM_018074Re-query CCDS DB by Protein ID:NP_060544Link to BLAST:NP_060544.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060544.2 323 Q9BW85 323 100% 0 0

Chromosomal Locations for CCDS 12124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4247147 4247170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4249228 4249328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4251027 4251171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4254355 4254489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4258242 4258423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4261994 4262114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4267624 4267774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4268584 4268696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGTCGGAGCGAAAAGTATTAAACAAATACTACCCGCCGGACTTTGACCCATCAAAGATCCCCAAACTCA
AGCTCCCCAAAGACCGGCAGTACGTGGTGCGGCTGATGGCCCCCTTCAACATGAGGTGTAAGACGTGCGG
AGAATACATCTACAAGGGGAAGAAATTCAATGCTCGGAAGGAGACGGTGCAGAACGAGGTCTACCTGGGC
CTGCCCATCTTCCGCTTTTACATCAAGTGCACGCGCTGCCTGGCAGAGATCACCTTCAAGACAGACCCTG
AAAACACAGACTACACCATGGAGCATGGAGCCACGCGGAATTTCCAGGCTGAGAAGCTCCTGGAGGAGGA
GGAGAAGAGGGTGCAGAAGGAGCGGGAGGACGAGGAGCTGAACAACCCCATGAAGGTGCTGGAGAACCGG
ACCAAGGACTCCAAGCTGGAGATGGAGGTGCTGGAGAACCTCCAGGAGCTGAAAGACCTGAACCAGCGGC
AGGCGCACGTGGACTTCGAGGCTATGCTGAGGCAGCACCGCCTGTCGGAGGAGGAGCGGCGGAGGCAGCA
GCAGGAGGAGGACGAGCAGGAGACCGCGGCCCTGTTGGAGGAAGCCAGAAAGCGAAGACTGCTGGAGGAC
TCCGACTCAGAGGATGAGGCTGCTCCCTCGCCCCTGCAGCCAGCCCTTCGGCCCAACCCCACCGCCATCC
TGGATGAGGCCCCAAAGCCCAAGAGGAAGGTGGAGGTCTGGGAGCAGAGCGTTGGCAGCCTGGGCAGCCG
GCCCCCGCTGTCGAGGCTGGTCGTGGTGAAGAAGGCAAAGGCCGACCCGGACTGCAGCAACGGGCAGCCT
CAGGCGGCCCCCACCCCAGGAGCCCCGCAGAACAGGAAGGAGGCCAACCCTACACCCCTGACGCCTGGCG
CGTCCTCCCTGAGCCAACTGGGTGCATACCTGGACAGTGACGACAGCAACGGCAGCAACTGA

Translation (323 aa):
MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEVYLG
LPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENR
TKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEEERRRQQQEEDEQETAALLEEARKRRLLED
SDSEDEAAPSPLQPALRPNPTAILDEAPKPKRKVEVWEQSVGSLGSRPPLSRLVVVKKAKADPDCSNGQP
QAAPTPGAPQNRKEANPTPLTPGASSLSQLGAYLDSDDSNGSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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