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Report for CCDS16696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16696.1 Public Mus musculus 2 Ciao1 23 108 98 CCDS HistoryNCBI Gene:26371Re-query CCDS DB by CCDS ID:16696.1Re-query CCDS DB by GeneID:26371See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003759.10 ENSMUSP00000003759.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003759.10Link to Ensembl Protein Viewer:ENSMUSP00000003759.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000003759Re-query CCDS DB by Protein ID:ENSMUSP00000003759
Original member Current member NCBI NM_025296.4 NP_079572.2 Accepted alive Link to Nucleotide Sequence:NM_025296.4Link to Protein Sequence:NP_079572.2Re-query CCDS DB by Nucleotide ID:NM_025296Re-query CCDS DB by Protein ID:NP_079572Link to BLAST:NP_079572.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079572.2 339 Q99KN2 339 100% 0 0

Chromosomal Locations for CCDS 16696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127242797 127243037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127244913 127245000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127245723 127245924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127246413 127246501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127246602 127246713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127247010 127247158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127247482 127247620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGAAAGATTCTCTGGTACTGCAGAGCCGCGTCCCGGCGCACCCGGATTCCCGCTGCTGGTTCCTGGCCT
GGAACCCCTCGGGGACCCTGTTGGCTTCCTGCGGAGGCGACCGTAAAATTCGCATCTGGGGCACCGAGGG
TGACAGCTGGATTTGCAAGTCTGTCCTTTCTGAAGGCCATCAGCGCACCGTTAGGAAAGTGGCCTGGTCC
CCGTGTGGAAATTACCTGGCATCTGCCAGCTTTGATGCCACCACTTGTATTTGGAAGAAGAACCAGGATG
ACTTTGAGTGTGTGACCACTCTTGAGGGCCATGAAAATGAGGTCAAGTCAGTGGCTTGGGCCCCATCTGG
CAACCTCTTGGCTACCTGCAGCAGAGATAAGAGCGTGTGGGTCTGGGAAGTTGATGAAGAGGATGAGTAT
GAGTGTGTCAGTGTCCTCAGCTCTCATACGCAGGACGTTAAGCACGTGGTTTGGCACCCGAGCCAGGAGC
TTTTAGCTTCTGCTAGCTATGATGACACAGTGAAGCTATACCAGGAAGAAGGGGATGACTGGGTCTGCTG
TGCCACCCTCGAAGGTCATGAGTCCACTGTTTGGAGCATAGCCTTTGATCCCAGCGGCCAGCGGCTGGCA
TCTTGCAGTGATGACCGAACTGTACGCATCTGGCGCCAGTATCTACCGGGCAATGAACAAGGGGTGGCAT
GCAGTGGCTCTGACCCCAGCTGGAAATGTATCTGCACTTTGTCGGGCTTCCACACCAGGACCATTTACGA
CGTTGCTTGGTGTCAGCTGACAGGGGCCTTGGCTACAGCTTGTGGAGATGATGCCATCCGAGTGTTTGAG
GAAGACCCAGGCTCAGACCCACAGCAGCCCACCTTCTCTCTGACAGCCCATCTTCGTCAGGCCCATTCCC
AGGATGTCAACTGTGTGGCTTGGAATCCCAAGGAGCCAGGGCTCCTGGCCTCTTGTAGTGATGATGGGGA
GGTAGCCTTCTGGGAGTATCACCAGCCTGCAGGTCTCTGA

Translation (339 aa):
MKDSLVLQSRVPAHPDSRCWFLAWNPSGTLLASCGGDRKIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS
PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY
ECVSVLSSHTQDVKHVVWHPSQELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLA
SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHTRTIYDVAWCQLTGALATACGDDAIRVFE
EDPGSDPQQPTFSLTAHLRQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWEYHQPAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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