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Report for CCDS14100.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14100.2 Public Homo sapiens 22 ARSA 24 110 108 CCDS HistoryNCBI Gene:410Re-query CCDS DB by CCDS ID:14100.2Re-query CCDS DB by GeneID:410See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 14100.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The updated start codon appears to be restricted to primate species, and it has a weak Kozak signal. It is possible that ribosomal leaky scanning may allow the better conserved downstream start codon to be used some of the time. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14100.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216124.10 ENSP00000216124.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216124.10Link to Ensembl Protein Viewer:ENSP00000216124.5Re-query CCDS DB by Nucleotide ID:ENST00000216124Re-query CCDS DB by Protein ID:ENSP00000216124
Original member Current member EBI ENST00000356098.9 ENSP00000348406.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356098.9Link to Ensembl Protein Viewer:ENSP00000348406.5Re-query CCDS DB by Nucleotide ID:ENST00000356098Re-query CCDS DB by Protein ID:ENSP00000348406
Original member Current member EBI ENST00000395619.3 ENSP00000378981.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395619.3Link to Ensembl Protein Viewer:ENSP00000378981.3Re-query CCDS DB by Nucleotide ID:ENST00000395619Re-query CCDS DB by Protein ID:ENSP00000378981
Original member Current member EBI ENST00000395621.7 ENSP00000378983.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395621.7Link to Ensembl Protein Viewer:ENSP00000378983.3Re-query CCDS DB by Nucleotide ID:ENST00000395621Re-query CCDS DB by Protein ID:ENSP00000378983
Original member Current member NCBI NM_000487.6 NP_000478.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000487.6Link to Protein Sequence:NP_000478.3Re-query CCDS DB by Nucleotide ID:NM_000487Re-query CCDS DB by Protein ID:NP_000478Link to BLAST:NP_000478.3
Original member Current member NCBI NM_001085425.3 NP_001078894.2 Accepted alive Link to Nucleotide Sequence:NM_001085425.3Link to Protein Sequence:NP_001078894.2Re-query CCDS DB by Nucleotide ID:NM_001085425Re-query CCDS DB by Protein ID:NP_001078894Link to BLAST:NP_001078894.2
Original member Current member NCBI NM_001085426.3 NP_001078895.2 Accepted alive Link to Nucleotide Sequence:NM_001085426.3Link to Protein Sequence:NP_001078895.2Re-query CCDS DB by Nucleotide ID:NM_001085426Re-query CCDS DB by Protein ID:NP_001078895Link to BLAST:NP_001078895.2
Original member Current member NCBI NM_001085427.3 NP_001078896.2 Accepted alive Link to Nucleotide Sequence:NM_001085427.3Link to Protein Sequence:NP_001078896.2Re-query CCDS DB by Nucleotide ID:NM_001085427Re-query CCDS DB by Protein ID:NP_001078896Link to BLAST:NP_001078896.2

Chromosomal Locations for CCDS 14100.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50625145 50625464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50625579 50625681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50625936 50626063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50626154 50626278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50626591 50626760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50626834 50627052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50627166 50627406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50627556 50627779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGTCCATGGGGGCACCGCGGTCCCTCCTCCTGGCCCTGGCTGCTGGCCTGGCCGTTGCCCGTCCGCCCA
ACATCGTGCTGATCTTTGCCGACGACCTCGGCTATGGGGACCTGGGCTGCTATGGGCACCCCAGCTCTAC
CACTCCCAACCTGGACCAGCTGGCGGCGGGAGGGCTGCGGTTCACAGACTTCTACGTGCCTGTGTCTCTG
TGCACACCCTCTAGGGCCGCCCTCCTGACCGGCCGGCTCCCGGTTCGGATGGGCATGTACCCTGGCGTCC
TGGTGCCCAGCTCCCGGGGGGGCCTGCCCCTGGAGGAGGTGACCGTGGCCGAAGTCCTGGCTGCCCGAGG
CTACCTCACAGGAATGGCCGGCAAGTGGCACCTTGGGGTGGGGCCTGAGGGGGCCTTCCTGCCCCCCCAT
CAGGGCTTCCATCGATTTCTAGGCATCCCGTACTCCCACGACCAGGGCCCCTGCCAGAACCTGACCTGCT
TCCCGCCGGCCACTCCTTGCGACGGTGGCTGTGACCAGGGCCTGGTCCCCATCCCACTGTTGGCCAACCT
GTCCGTGGAGGCGCAGCCCCCCTGGCTGCCCGGACTAGAGGCCCGCTACATGGCTTTCGCCCATGACCTC
ATGGCCGACGCCCAGCGCCAGGATCGCCCCTTCTTCCTGTACTATGCCTCTCACCACACCCACTACCCTC
AGTTCAGTGGGCAGAGCTTTGCAGAGCGTTCAGGCCGCGGGCCATTTGGGGACTCCCTGATGGAGCTGGA
TGCAGCTGTGGGGACCCTGATGACAGCCATAGGGGACCTGGGGCTGCTTGAAGAGACGCTGGTCATCTTC
ACTGCAGACAATGGACCTGAGACCATGCGTATGTCCCGAGGCGGCTGCTCCGGTCTCTTGCGGTGTGGAA
AGGGAACGACCTACGAGGGCGGTGTCCGAGAGCCTGCCTTGGCCTTCTGGCCAGGTCATATCGCTCCCGG
CGTGACCCACGAGCTGGCCAGCTCCCTGGACCTGCTGCCTACCCTGGCAGCCCTGGCTGGGGCCCCACTG
CCCAATGTCACCTTGGATGGCTTTGACCTCAGCCCCCTGCTGCTGGGCACAGGCAAGAGCCCTCGGCAGT
CTCTCTTCTTCTACCCGTCCTACCCAGACGAGGTCCGTGGGGTTTTTGCTGTGCGGACTGGAAAGTACAA
GGCTCACTTCTTCACCCAGGGCTCTGCCCACAGTGATACCACTGCAGACCCTGCCTGCCACGCCTCCAGC
TCTCTGACTGCTCATGAGCCCCCGCTGCTCTATGACCTGTCCAAGGACCCTGGTGAGAACTACAACCTGC
TGGGGGGTGTGGCCGGGGCCACCCCAGAGGTGCTGCAAGCCCTGAAACAGCTTCAGCTGCTCAAGGCCCA
GTTAGACGCAGCTGTGACCTTCGGCCCCAGCCAGGTGGCCCGGGGCGAGGACCCCGCCCTGCAGATCTGC
TGTCATCCTGGCTGCACCCCCCGCCCAGCTTGCTGCCATTGCCCAGATCCCCATGCCTGA

Translation (509 aa):
MSMGAPRSLLLALAAGLAVARPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSL
CTPSRAALLTGRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPH
QGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEARYMAFAHDL
MADAQRQDRPFFLYYASHHTHYPQFSGQSFAERSGRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIF
TADNGPETMRMSRGGCSGLLRCGKGTTYEGGVREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPL
PNVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRTGKYKAHFFTQGSAHSDTTADPACHASS
SLTAHEPPLLYDLSKDPGENYNLLGGVAGATPEVLQALKQLQLLKAQLDAAVTFGPSQVARGEDPALQIC
CHPGCTPRPACCHCPDPHA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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