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Report for CCDS4408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4408.1 Public Homo sapiens 5 UIMC1 24 110 108 CCDS HistoryNCBI Gene:51720Re-query CCDS DB by CCDS ID:4408.1Re-query CCDS DB by GeneID:51720See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377227.8 ENSP00000366434.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377227.8Link to Ensembl Protein Viewer:ENSP00000366434.4Re-query CCDS DB by Nucleotide ID:ENST00000377227Re-query CCDS DB by Protein ID:ENSP00000366434
Original member Current member EBI ENST00000511320.6 ENSP00000421926.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000511320.6Link to Ensembl Protein Viewer:ENSP00000421926.1Re-query CCDS DB by Nucleotide ID:ENST00000511320Re-query CCDS DB by Protein ID:ENSP00000421926
Original member Current member NCBI NM_001199297.2 NP_001186226.1 Accepted alive Link to Nucleotide Sequence:NM_001199297.2Link to Protein Sequence:NP_001186226.1Re-query CCDS DB by Nucleotide ID:NM_001199297Re-query CCDS DB by Protein ID:NP_001186226Link to BLAST:NP_001186226.1
Original member Current member NCBI NM_001199298.2 NP_001186227.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199298.2Link to Protein Sequence:NP_001186227.1Re-query CCDS DB by Nucleotide ID:NM_001199298Re-query CCDS DB by Protein ID:NP_001186227Link to BLAST:NP_001186227.1
Original member Current member NCBI NM_016290.4 NP_057374.3 Accepted alive Link to Nucleotide Sequence:NM_016290.4Link to Protein Sequence:NP_057374.3Re-query CCDS DB by Nucleotide ID:NM_016290Re-query CCDS DB by Protein ID:NP_057374Link to BLAST:NP_057374.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186226.1 719 Q96RL1-1 719 100% 0 0
NP_001186227.1 719 Q96RL1-1 719 100% 0 0
NP_057374.3 719 Q96RL1-1 719 100% 0 0

Chromosomal Locations for CCDS 4408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176905282 176905492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176906011 176906047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176907114 176907177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176908523 176908694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176911311 176911389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176943335 176943488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176951474 176951577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176955959 176956035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176958093 176958154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176968555 176969291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176969601 176969706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176970742 176970866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176975396 176975480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176982469 176982615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGCCACGGAGAAAGAAAAAAGTTAAAGAAGTCTCCGAATCTCGGAACCTGGAGAAGAAGGATGTGGAAA
CTACCAGTTCTGTCAGTGTGAAGAGGAAGCGTAGACTTGAGGATGCATTCATTGTGATATCCGATAGTGA
TGGAGAGGAACCAAAGGAGGAAAATGGGTTGCAGAAAACGAAGACAAAACAGTCGAATAGAGCAAAGTGT
TTGGCCAAAAGAAAAATCGCACAGATGACAGAAGAAGAACAGTTTGCTCTGGCTCTCAAAATGAGTGAGC
AGGAAGCTAGGGAGGTGAACAGCCAGGAGGAGGAAGAAGAGGAGCTCTTGAGGAAAGCCATTGCTGAAAG
CCTGAATAGTTGCCGGCCTTCTGATGCTTCCGCTACCAGATCTCGACCTCTGGCCACTGGACCGTCTTCC
CAGTCCCATCAAGAGAAAACCACAGACTCTGGGCTCACTGAAGGCATATGGCAGCTGGTACCTCCATCAC
TGTTTAAAGGCTCACATATCAGTCAGGGAAACGAGGCTGAGGAAAGAGAGGAGCCTTGGGACCACACTGA
AAAAACTGAAGAGGAGCCGGTCTCTGGCAGCTCAGGAAGCTGGGACCAGTCAAGCCAGCCAGTGTTTGAG
AATGTGAACGTTAAATCTTTTGACAGATGTACTGGCCACTCGGCTGAGCACACACAGTGTGGGAAGCCAC
AGGAAAGTACTGGGAGGGGTTCTGCTTTTCTCAAAGCTGTCCAGGGTAGCGGGGACACATCTAGGCACTG
TCTACCTACCCTAGCAGATGCCAAAGGTCTCCAGGACACTGGGGGCACTGTGAACTATTTCTGGGGTATT
CCATTCTGCCCTGATGGAGTAGACCCTAACCAGTATACCAAGGTCATTCTCTGCCAGTTGGAGGTTTATC
AAAAGAGCCTGAAAATGGCTCAGAGGCAGCTCCTTAATAAAAAAGGTTTTGGGGAACCAGTGTTACCTAG
ACCTCCTTCTCTGATCCAGAATGAATGTGGCCAAGGAGAGCAGGCTAGTGAGAAAAATGAATGCATCTCA
GAAGATATGGGAGATGAAGACAAAGAGGAGAGGCAGGAGTCTAGGGCATCTGACTGGCACTCAAAAACCA
AGGATTTCCAGGAAAGCTCAATTAAAAGCTTGAAAGAGAAACTTTTGTTGGAGGAAGAACCAACAACCAG
TCATGGTCAGTCTTCCCAAGGGATTGTTGAAGAAACTTCTGAAGAGGGAAACTCTGTACCTGCTTCACAA
AGTGTTGCTGCTTTGACCAGTAAGAGAAGCTTAGTCCTTATGCCAGAGAGTTCTGCAGAAGAAATCACTG
TTTGTCCTGAGACCCAGCTAAGTTCCTCTGAAACTTTTGACCTTGAAAGAGAAGTCTCTCCAGGTAGCAG
AGATATCTTGGATGGAGTCAGAATAATAATGGCAGATAAGGAGGTTGGTAACAAGGAAGATGCTGAGAAG
GAAGTAGCTATTTCTACCTTCTCATCCAGTAACCAGGTATCCTGCCCGCTATGTGACCAATGCTTTCCAC
CCACAAAGATTGAACGACATGCCATGTACTGCAATGGTCTGATGGAGGAAGATACAGTATTGACTCGGAG
ACAAAAAGAGGCCAAGACCAAGAGTGACAGTGGGACAGCTGCCCAGACTTCTCTAGACATTGACAAGAAT
GAGAAGTGTTACCTCTGTAAATCCCTGGTCCCATTTAGAGAGTATCAGTGTCATGTGGACTCCTGTCTCC
AGCTTGCAAAGGCTGACCAAGGAGATGGACCTGAAGGGAGTGGAAGAGCATGTTCAACTGTGGAGGGGAA
GTGGCAGCAGAGGCTGAAGAACCCAAAGGAAAAAGGCCACAGTGAAGGCCGACTCCTTAGTTTCTTGGAA
CAGTCTGAGCACAAGACTTCAGATGCAGACATCAAGTCTTCAGAAACAGGAGCCTTCAGGGTGCCTTCAC
CAGGGATGGAAGAGGCAGGCTGCAGCAGAGAGATGCAGAGTTCTTTCACACGTCGTGACTTAAATGAATC
TCCCGTCAAGTCTTTTGTTTCCATTTCAGAAGCCACAGATTGCTTAGTGGACTTTAAAAAGCAAGTTACT
GTCCAGCCAGGTAGTCGGACACGGACCAAAGCTGGCAGAGGAAGAAGGAGAAAATTCTGA

Translation (719 aa):
MPRRKKKVKEVSESRNLEKKDVETTSSVSVKRKRRLEDAFIVISDSDGEEPKEENGLQKTKTKQSNRAKC
LAKRKIAQMTEEEQFALALKMSEQEAREVNSQEEEEEELLRKAIAESLNSCRPSDASATRSRPLATGPSS
QSHQEKTTDSGLTEGIWQLVPPSLFKGSHISQGNEAEEREEPWDHTEKTEEEPVSGSSGSWDQSSQPVFE
NVNVKSFDRCTGHSAEHTQCGKPQESTGRGSAFLKAVQGSGDTSRHCLPTLADAKGLQDTGGTVNYFWGI
PFCPDGVDPNQYTKVILCQLEVYQKSLKMAQRQLLNKKGFGEPVLPRPPSLIQNECGQGEQASEKNECIS
EDMGDEDKEERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQ
SVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKN
EKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLE
QSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVT
VQPGSRTRTKAGRGRRRKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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