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Report for CCDS90511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90511.1 Public Mus musculus 9 Slc44a2 23 108 98 CCDS HistoryNCBI Gene:68682Re-query CCDS DB by CCDS ID:90511.1Re-query CCDS DB by GeneID:68682See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217461.1 ENSMUSP00000150147.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217461.1Link to Ensembl Protein Viewer:ENSMUSP00000150147.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217461Re-query CCDS DB by Protein ID:ENSMUSP00000150147
Original member Current member NCBI NM_001199186.1 NP_001186115.1 Accepted alive Link to Nucleotide Sequence:NM_001199186.1Link to Protein Sequence:NP_001186115.1Re-query CCDS DB by Nucleotide ID:NM_001199186Re-query CCDS DB by Protein ID:NP_001186115Link to BLAST:NP_001186115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186115.1 704 Q8BY89-2 704 100% 0 0

Chromosomal Locations for CCDS 90511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21320821 21320851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21338441 21338489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21341779 21341852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21341939 21342023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21342183 21342267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21342395 21342505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21342598 21342658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21342743 21342866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21342964 21343047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21343135 21343247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21344832 21344963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21345293 21345392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21345479 21345571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21345909 21345993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21346689 21346951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21347035 21347129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21347883 21347986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21348075 21348148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21348328 21348398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21348538 21348626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21352467 21352551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21353682 21353788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGGAGGACGATCGGAAGGACGCAGTCTATGGGACGCCTCAGAAATACGACCCCACCTTCAAAGGACCCA
TTTACAACAGGGGATGCACAGATGTCATTTGCTGTGTGTTGCTCTTCCTGGCCATCGTAGGCTATGTGGC
TGTGGGCATCATAGCCTGGACCCATGGAGACCCTCGGAAGGTGATCTACCCCACTGATAGCCGGGGCGAA
TTCTGTGGGCAAAAGGGGACAAAAAATGCGGACAAACCGTTCTTGTTTTACTTCAACATCGTGAAGTGTG
CCAACCCCCTGGTCCTGCTGGAATTTCACTGTCCCACCCCTCAGATCTGCGTGAAGCAGTGTCCAGACCG
CTATCTCACCCTTCTGAGTGCGCGCAACACTCGCGACTTTGACTATTACAAGCAGTTCTGTGTGCCTGGC
TTCCAGAACAATAAAGGGGTGACTGAGATACTCCGAGATGGGGAGTGTCCAGCGGTTATCACCCCCAGCA
AACCTTTGGCCCAGCGGTGCTTTCCCGCCATCCATGCCAGCAAAGGAGTCCTCATGGTGGGCAATGAGAC
GACCTATGAGGACGGACATGGCGCCAGAAAGAACATTACAGATCTAGTGGAGGGTGCCAAAAAGGCCAAC
AAGATTCTAGAGGCCCGGCAACTCGCCATGCAGATATTTGAAGATTACACTGTATCCTGGTACTGGATTA
TCATAGGTCTGGTCATTGCCATGGTGCTGAGTCTCCTGTTCATCGTCCTGCTGCGATTCCTGGCTGGCAT
TATGGTCTGGGTGATGATTGTCATGGTGATCCTGGTGCTTGGCTATGGCATCTTCCACTGCTACATGGAG
TACTCGAGACTCCGTGGAGAGGCAGGCTCCGACGTCTCCCTGGTGGACCTTGGCTTCCAGACGGACCTCC
GAGTGTACCTGCACTTGAGGCAGACCTGGATGGCTTTTATGATCATTTTAAGCATCCTGGAAGTGGTCAT
CATCCTGTTACTTATCTTTCTGCGCAAAAGGATATTGATCGCCATCGCCCTCATCAAAGAAGCCAGCAGG
GCTGTGGGACATGTCATGTGCTCCCTGCTCTACCCACTGGTGACCTTCTTCCTCTTGTGTCTCTGCATTG
CCTACTGGGCCAGCACTTCTGTATTCCTGTCCACCTCCAACACCGCCGTGTACAAGGTTGTTGATGACAC
AGCCTGCCCACTTCTGAGGAAAACCTGCAACCCAGAGACCTTCCCCTTGCGGAATGAGAGCCTCCAGTGT
CCCACTGCCCGCTGCCAGTTTGCCTTCTATGGTGGCGAATCGACCTACCACCGTGCCCTGCTGGGCCTGC
AGATCTTCAATGCATTCATGTTCTTCTGGCTAGCCAACTTCGTGCTGGCCCTAGGCCAGGTAACCCTGGC
CGGAGCCTTTGCCTCCTATTACTGGGCTATGCGGAAGCCTGATGATATGCCTGCCTTCCCCCTCTTCTCT
GCTTTTGGCCGAGCACTCAGGTACCACACGGGCTCCTTAGCTTTTGGCTCCCTTATCTTAGCCATCGTGC
AGATCATCCGAGTGATGCTGGAATACCTGGACCAGCGCCTAAAAGCTGCACAGAACAAGTTTGCCAAGTT
CCTCATGGTCTGTCTCAAGTGCTGCTTCTGGTGCCTAGAGAAGTTTATCAAATTCCTGAATAGGAATGCC
TACATCATGATTGCTATCTATGGCACCAACTTCTGTACCTCAGCCAGGAATGCCTTCTTCCTGCTTATGA
GAAATATCATCAGGGTGGCCGTCCTGGACAAAGTTACAGACTTCCTCTTCCTGTTGGGCAAACTTCTGAT
TGTGGGTAGTGTGGGCATCCTGGCCTTCTTCTTCTTCACCCATCGGATCAGAATTGTGCAAGATACAGCC
CCACCTCTCAATTATTACTGGGTTCCGATCCTGACAGTGATCATTGGCTCCTACTTGATCGCGCACGGCT
TCTTCAGCGTCTATGGCATGTGCGTGGACACGCTGTTCCTCTGTTTCTTGGAGGATCTGGAGAGAAATGA
CGGTTCAGCCGAGAGGCCTTACTTCATGTCTTCCACTCTCAAGAAACTCTTGAATAAAACCAACAAGAAA
GTAGCAGAATCCTAA

Translation (704 aa):
MEDDRKDAVYGTPQKYDPTFKGPIYNRGCTDVICCVLLFLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGE
FCGQKGTKNADKPFLFYFNIVKCANPLVLLEFHCPTPQICVKQCPDRYLTLLSARNTRDFDYYKQFCVPG
FQNNKGVTEILRDGECPAVITPSKPLAQRCFPAIHASKGVLMVGNETTYEDGHGARKNITDLVEGAKKAN
KILEARQLAMQIFEDYTVSWYWIIIGLVIAMVLSLLFIVLLRFLAGIMVWVMIVMVILVLGYGIFHCYME
YSRLRGEAGSDVSLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVVIILLLIFLRKRILIAIALIKEASR
AVGHVMCSLLYPLVTFFLLCLCIAYWASTSVFLSTSNTAVYKVVDDTACPLLRKTCNPETFPLRNESLQC
PTARCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWAMRKPDDMPAFPLFS
AFGRALRYHTGSLAFGSLILAIVQIIRVMLEYLDQRLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNA
YIMIAIYGTNFCTSARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTA
PPLNYYWVPILTVIIGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKK
VAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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